[MINC-users] Virtual machine that includes minc tools

[Vladimir S. FONOV]

Hello,

On 16-05-18 10:42 AM, Dante De Nigris wrote:
> Similar to Pierre's previous proposal, I recently built a docker image with
> the minc-toolkit.  I was personally interested in building a very small
> image so I use the Alpine Linux Base image and build everything from
> scratch.
So, you want to run minc-toolkit on your embedded device?



>
> Thiis might not correspond directly to your current needs, but it was
> pretty reasonable for me.
>
> https://hub.docker.com/r/dantino19/minc-toolkit/
>
>
>
> On Tue, May 17, 2016 at 11:39 PM Paul GRAVEL <pgravel at bic.mni.mcgill.ca>
> wrote:
>
>> Once again many thanks Andrew and Pierre!
>>
>> It seems to have worked after sourcing /opt/minc/minc-toolkit-config.sh .
>>
>> I will give it a try (using MINC files) tomorrow.
>>
>> @Andrew: have a good day!
>>
>> @Pierre: Have a good night!
>>
>> Best,
>>
>> Paul
>>
>> On Tue, 17 May 2016, Pierre Bellec wrote:
>>
>>> Paul, you may also want to look at dependencies and sourcing
>>> environment variables (paragraph "using") in the documentation:
>>> http://bic-mni.github.io/#installing
>>>
>>> Pierre Bellec
>>> Assistant professor ("adjoint sous octroi"), Department of computer
>> science
>>> and operational research (DIRO <http://diro.umontreal.ca/>)
>>> Member, Centre de recherche de l'institut Universitaire de gériatrie de
>>> Montréal (CRIUGM <http://www.criugm.qc.ca/>)
>>> Member, Institute of Biomedical Engineering <
>> http://www.igb.umontreal.ca/>
>>> Université de Montréal, Montréal, Canada
>>> Phone +1 514 713 5596
>>> Full coordinates on my home page
>>> <http://simexp-lab.org/brainwiki/doku.php?id=pierrebellec>
>>> Laboratory website <http://simexp-lab.org>.
>>>
>>> On Tue, May 17, 2016 at 11:01 PM, Andrew Janke <a.janke at gmail.com>
>> wrote:
>>>
>>>> In my case I add my own private apt repository that mirrors things
>>>> from the new a shiny source here:
>>>>
>>>>     http://bic-mni.github.io/
>>>>
>>>> In your case, just download the appropriate .deb file and then install
>>>> using dpkg.
>>>>
>>>> This should do it:
>>>>
>>>>     $ wget
>>>>
>> http://packages.bic.mni.mcgill.ca/minc-toolkit/Debian/minc-toolkit-1.9.11-20160202-Debian_7.3-x86_64.deb
>>>>
>>>>     $ sudo dpkg -i minc-toolkit-1.9.11-20160202-Debian_7.3-x86_64.deb
>>>>
>>>>
>>>> a
>>>>
>>>> On 18 May 2016 at 12:56, Paul GRAVEL <pgravel at bic.mni.mcgill.ca> wrote:
>>>>> So I installed:
>>>>> NeuroDebian 7.8.0 image (64bit) for Windows 7 64 bit.
>>>>>
>>>>> After importing the "Applicance" in VirtualBox and configuring, I can
>>>> start
>>>>> the virtual machine, so far so good, but when I come to install the
>>>>> minctools; I had to use:
>>>>> sudo apt-get install minc-toolkit
>>>>>
>>>>> I get the following:
>>>>> Reading package lists... Done
>>>>> Building dependency tree
>>>>> Reading state information... Done
>>>>> E: Unable to locate package minc-toolkit
>>>>>
>>>>> any ideas?
>>>>>
>>>>> Thanks again!
>>>>>
>>>>> Paul
>>>>>
>>>>>
>>>>>
>>>>> On Wed, 18 May 2016, Andrew Janke wrote:
>>>>>
>>>>>> I'm sure I saw one pass through the minc-users mailing list a while
>>>> back?
>>>>>>
>>>>>> I use the neurodebian VM and then
>>>>>>
>>>>>>    apt-get install minc-toolkit     (thanks Vlad!)
>>>>>>
>>>>>> a
>>>>>>
>>>>>>
>>>>>> On 18 May 2016 at 11:58, Paul GRAVEL <pgravel at bic.mni.mcgill.ca>
>> wrote:
>>>>>>>
>>>>>>> Dear All,
>>>>>>>
>>>>>>> I want to prepare a virtual machine for VirtualBox that includes a
>>>> linux
>>>>>>> version with the minc tools. But being lazy (;-)!), I was wondering
>> if
>>>>>>> anyone already had that and be willing to share.
>>>>>>> Otherwise, any pointers on how to go about it (of course I would be
>>>>>>> willing
>>>>>>> to share the finished product!)?


-- 
Best regards,

  Vladimir S. FONOV ~ vladimir.fonov <at> gmail.com