[MINC-users] Virtual machine that includes minc tools

[Dante De Nigris]

Hi all,

Similar to Pierre's previous proposal, I recently built a docker image with
the minc-toolkit.  I was personally interested in building a very small
image so I use the Alpine Linux Base image and build everything from
scratch.

Thiis might not correspond directly to your current needs, but it was
pretty reasonable for me.

https://hub.docker.com/r/dantino19/minc-toolkit/



On Tue, May 17, 2016 at 11:39 PM Paul GRAVEL <pgravel at bic.mni.mcgill.ca>
wrote:

> Once again many thanks Andrew and Pierre!
>
> It seems to have worked after sourcing /opt/minc/minc-toolkit-config.sh .
>
> I will give it a try (using MINC files) tomorrow.
>
> @Andrew: have a good day!
>
> @Pierre: Have a good night!
>
> Best,
>
> Paul
>
> On Tue, 17 May 2016, Pierre Bellec wrote:
>
> > Paul, you may also want to look at dependencies and sourcing
> > environment variables (paragraph "using") in the documentation:
> > http://bic-mni.github.io/#installing
> >
> > Pierre Bellec
> > Assistant professor ("adjoint sous octroi"), Department of computer
> science
> > and operational research (DIRO <http://diro.umontreal.ca/>)
> > Member, Centre de recherche de l'institut Universitaire de gériatrie de
> > Montréal (CRIUGM <http://www.criugm.qc.ca/>)
> > Member, Institute of Biomedical Engineering <
> http://www.igb.umontreal.ca/>
> > Université de Montréal, Montréal, Canada
> > Phone +1 514 713 5596
> > Full coordinates on my home page
> > <http://simexp-lab.org/brainwiki/doku.php?id=pierrebellec>
> > Laboratory website <http://simexp-lab.org>.
> >
> > On Tue, May 17, 2016 at 11:01 PM, Andrew Janke <a.janke at gmail.com>
> wrote:
> >
> >> In my case I add my own private apt repository that mirrors things
> >> from the new a shiny source here:
> >>
> >>    http://bic-mni.github.io/
> >>
> >> In your case, just download the appropriate .deb file and then install
> >> using dpkg.
> >>
> >> This should do it:
> >>
> >>    $ wget
> >>
> http://packages.bic.mni.mcgill.ca/minc-toolkit/Debian/minc-toolkit-1.9.11-20160202-Debian_7.3-x86_64.deb
> >>
> >>    $ sudo dpkg -i minc-toolkit-1.9.11-20160202-Debian_7.3-x86_64.deb
> >>
> >>
> >> a
> >>
> >> On 18 May 2016 at 12:56, Paul GRAVEL <pgravel at bic.mni.mcgill.ca> wrote:
> >> > So I installed:
> >> > NeuroDebian 7.8.0 image (64bit) for Windows 7 64 bit.
> >> >
> >> > After importing the "Applicance" in VirtualBox and configuring, I can
> >> start
> >> > the virtual machine, so far so good, but when I come to install the
> >> > minctools; I had to use:
> >> > sudo apt-get install minc-toolkit
> >> >
> >> > I get the following:
> >> > Reading package lists... Done
> >> > Building dependency tree
> >> > Reading state information... Done
> >> > E: Unable to locate package minc-toolkit
> >> >
> >> > any ideas?
> >> >
> >> > Thanks again!
> >> >
> >> > Paul
> >> >
> >> >
> >> >
> >> > On Wed, 18 May 2016, Andrew Janke wrote:
> >> >
> >> >> I'm sure I saw one pass through the minc-users mailing list a while
> >> back?
> >> >>
> >> >> I use the neurodebian VM and then
> >> >>
> >> >>   apt-get install minc-toolkit     (thanks Vlad!)
> >> >>
> >> >> a
> >> >>
> >> >>
> >> >> On 18 May 2016 at 11:58, Paul GRAVEL <pgravel at bic.mni.mcgill.ca>
> wrote:
> >> >>>
> >> >>> Dear All,
> >> >>>
> >> >>> I want to prepare a virtual machine for VirtualBox that includes a
> >> linux
> >> >>> version with the minc tools. But being lazy (;-)!), I was wondering
> if
> >> >>> anyone already had that and be willing to share.
> >> >>> Otherwise, any pointers on how to go about it (of course I would be
> >> >>> willing
> >> >>> to share the finished product!)?
> >> >>>
> >> >>> Many thanks!
> >> >>>
> >> >>> Paul
> >> >>>
> >> >>> _______________________________________________
> >> >>> MINC-users at bic.mni.mcgill.ca
> >> >>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> >> >>
> >> >> _______________________________________________
> >> >> MINC-users at bic.mni.mcgill.ca
> >> >> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> >> >>
> >> > _______________________________________________
> >> > MINC-users at bic.mni.mcgill.ca
> >> > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> >> _______________________________________________
> >> MINC-users at bic.mni.mcgill.ca
> >> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> >>
> > _______________________________________________
> > MINC-users at bic.mni.mcgill.ca
> > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> _______________________________________________
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> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>