[MINC-users] minc-toolkit-v2 compilation

[Jerome Redoute]

Thank you for these tips... compilation went further, but still have
some issues: 

- Warnings about modification time in the future: 

I've checked my time/date: they are OK 

- compilation ends with this error:

> [ 71%] Building C object mni_autoreg/minctracc/CMakeFiles/xfm2param.dir/Extra_progs/xfm2param.c.o
> [ 71%] Linking C executable xfm2param
> lib_minctracc.a(init_params.c.o): dans la fonction « vol_to_cov »:
> init_params.c:(.text+0xcd0): définitions multiples de « vol_to_cov »
> CMakeFiles/xfm2param.dir/Extra_progs/xfm2param.c.o:xfm2param.c:(.text+0x0): défini pour la première fois ici
> collect2: error: ld returned 1 exit status
> mni_autoreg/minctracc/CMakeFiles/xfm2param.dir/build.make:109: recipe for target 'mni_autoreg/minctracc/xfm2param' failed
> make[2]: *** [mni_autoreg/minctracc/xfm2param] Error 1
> CMakeFiles/Makefile2:15671: recipe for target 'mni_autoreg/minctracc/CMakeFiles/xfm2param.dir/all' failed
> make[1]: *** [mni_autoreg/minctracc/CMakeFiles/xfm2param.dir/all] Error 2
> Makefile:160: recipe for target 'all' failed
> make: *** [all] Error 2

and same for make install 

so the built binaries are not installed... 

any ideas on how to fix that? 

Thank you again 

---
==================================================
Jerome Redoute
CERMEP - Imagerie du vivant
Centre d'étude et de recherche multimodal et pluridisciplinaire
59 Bd Pinel
69667 Bron - FRANCE
tel : 33 (0)4 72 68 86 13 (bureau)
tel : 33 (0)4 72 68 86 00 (standard)
fax : 33 (0)4 72 68 86 10
================================================== 

Le 03/05/2016 17:55, Robert D. Vincent a écrit :

> Hi Jerome,
> 
> Here is how I check out 'develop' and build for everything on Ubuntu
> (although this is for minc-toolkit, not minc-toolkit-v2, the same idea
> should work).
> 
> sudo apt-get install -y \
> build-essential \
> g++ \
> cmake \
> cmake-curses-gui \
> bison \
> flex \
> freeglut3 \
> freeglut3-dev \
> libxi6 \
> libxi-dev \
> libxmu6 \
> libxmu-dev \
> libxmu-headers \
> zlib1g-dev \
> libexpat1-dev \
> bc \
> git
> 
> git clone --recursive git://github.com/BIC-MNI/minc-toolkit.git
> cd minc-toolkit
> git checkout develop
> git submodule foreach --recursive 'git checkout develop || :'
> 
> mkdir ../minc-build
> cd ../minc-build
> cmake ../minc-toolkit -DCMAKE_BUILD_TYPE=Release -DMT_BUILD_VISUAL_TOOLS=ON
> make
> 
> On Tue, May 3, 2016 at 10:46 AM, Jérôme Redouté <redoute at cermep.fr> wrote:
> 
> Hi,
> Could someone help me to set up my debian environment for compiling
> minc-toolkit-v2 using git repository?
> 
> |git clone --recursive https://github.com/BIC-MNI/minc-toolkit-v2.git minc-toolkit-v2 |
> allows me to copy all the repository.. but how can I compile the develop
> branch only?
> 
> is there specific instructions for ccmake et make?
> 
> Thanks for your help
> Jerome
> 
> --
> ==================================================================
> Jérôme Redouté
> Ph.D. - Ingénieur de Recherche - Université Claude Bernard - Lyon1
> CERMEP - Imagerie du vivant
> 59 Bd Pinel. 69677 Bron - FRANCE
> tel : 33 (0)4 72 68 86 18 (bureau)
> tel : 33 (0)4 72 68 86 00 (standard)
> fax : 33 (0)4 72 68 86 10
> ==================================================================
> 
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
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