[MINC-users] Problem with ZLIB when compiling minc-toolkit-v2

[vladimir.fonov at gmail.com]

Can you try running “make ZLIB” first , and then “make nii2mnc” ?


> On Jul 26, 2016, at 14:36, Thomas Funck, Mr <thomas.funck at mail.mcgill.ca> wrote:
> 
> Hi,
> 
> I'm trying to compile minc-toolkit-v2, but ran into the following problem. I'm trying to compile on Ubuntu 16.04.1 LTS and with USE_SYSTEM_ZLIB=OFF. I also tried minc-toolkit but ran into the same error.
> 
> Thanks for any help,
> 
> Thomas
> 
> Scanning dependencies of target nii2mnc
> [ 23%] Building C object minctools/conversion/CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o
> [ 23%] Linking C executable nii2mnc
> ../../external//usr/local/minc/lib/libznz.a(znzlib.o): In function `znzopen':
> znzlib.c:(.text+0x4a): undefined reference to `gzopen'
> ../../external//usr/local/minc/lib/libznz.a(znzlib.o): In function `znzdopen':
> znzlib.c:(.text+0x102): undefined reference to `gzdopen'
> ../../external//usr/local/minc/lib/libznz.a(znzlib.o): In function `Xznzclose':
> znzlib.c:(.text+0x166): undefined reference to `gzclose'
> ../../external//usr/local/minc/lib/libznz.a(znzlib.o): In function `znzread':
> znzlib.c:(.text+0x220): undefined reference to `gzread'
> ../../external//usr/local/minc/lib/libznz.a(znzlib.o): In function `znzwrite':
> znzlib.c:(.text+0x320): undefined reference to `gzwrite'
> ../../external//usr/local/minc/lib/libznz.a(znzlib.o): In function `znzseek':
> znzlib.c:(.text+0x3db): undefined reference to `gzseek'
> ../../external//usr/local/minc/lib/libznz.a(znzlib.o): In function `znzrewind':
> znzlib.c:(.text+0x447): undefined reference to `gzseek'
> ../../external//usr/local/minc/lib/libznz.a(znzlib.o): In function `znztell':
> znzlib.c:(.text+0x4a3): undefined reference to `gztell'
> ../../external//usr/local/minc/lib/libznz.a(znzlib.o): In function `znzputs':
> znzlib.c:(.text+0x4f7): undefined reference to `gzputs'
> ../../external//usr/local/minc/lib/libznz.a(znzlib.o): In function `znzgets':
> znzlib.c:(.text+0x55b): undefined reference to `gzgets'
> ../../external//usr/local/minc/lib/libznz.a(znzlib.o): In function `znzflush':
> znzlib.c:(.text+0x5c5): undefined reference to `gzflush'
> ../../external//usr/local/minc/lib/libznz.a(znzlib.o): In function `znzeof':
> znzlib.c:(.text+0x623): undefined reference to `gzeof'
> ../../external//usr/local/minc/lib/libznz.a(znzlib.o): In function `znzputc':
> znzlib.c:(.text+0x677): undefined reference to `gzputc'
> ../../external//usr/local/minc/lib/libznz.a(znzlib.o): In function `znzgetc':
> znzlib.c:(.text+0x6f5): undefined reference to `gzgetc'
> ../../external//usr/local/minc/lib/libznz.a(znzlib.o): In function `znzprintf':
> znzlib.c:(.text+0x798): undefined reference to `gzprintf'
> collect2: error: ld returned 1 exit status
> minctools/conversion/CMakeFiles/nii2mnc.dir/build.make:105: recipe for target 'minctools/conversion/nii2mnc' failed
> make[2]: *** [minctools/conversion/nii2mnc] Error 1
> CMakeFiles/Makefile2:5017: recipe for target 'minctools/conversion/CMakeFiles/nii2mnc.dir/all' failed
> make[1]: *** [minctools/conversion/CMakeFiles/nii2mnc.dir/all] Error 2
> Makefile:160: recipe for target 'all' failed
> make: *** [all] Error 2
> 
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users

Best regards, Vladimir S. FONOV ~ v.s.fonov <at> ilmarin.info