[MINC-users] Problem with ZLIB when compiling minc-toolkit-v2

[Thomas Funck, Mr]

Hi,

I'm trying to compile minc-toolkit-v2, but ran into the following problem. I'm trying to compile on Ubuntu 16.04.1 LTS and with USE_SYSTEM_ZLIB=OFF. I also tried minc-toolkit but ran into the same error.

Thanks for any help,

Thomas

Scanning dependencies of target nii2mnc
[ 23%] Building C object minctools/conversion/CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o
[ 23%] Linking C executable nii2mnc
../../external//usr/local/minc/lib/libznz.a(znzlib.o): In function `znzopen':
znzlib.c:(.text+0x4a): undefined reference to `gzopen'
../../external//usr/local/minc/lib/libznz.a(znzlib.o): In function `znzdopen':
znzlib.c:(.text+0x102): undefined reference to `gzdopen'
../../external//usr/local/minc/lib/libznz.a(znzlib.o): In function `Xznzclose':
znzlib.c:(.text+0x166): undefined reference to `gzclose'
../../external//usr/local/minc/lib/libznz.a(znzlib.o): In function `znzread':
znzlib.c:(.text+0x220): undefined reference to `gzread'
../../external//usr/local/minc/lib/libznz.a(znzlib.o): In function `znzwrite':
znzlib.c:(.text+0x320): undefined reference to `gzwrite'
../../external//usr/local/minc/lib/libznz.a(znzlib.o): In function `znzseek':
znzlib.c:(.text+0x3db): undefined reference to `gzseek'
../../external//usr/local/minc/lib/libznz.a(znzlib.o): In function `znzrewind':
znzlib.c:(.text+0x447): undefined reference to `gzseek'
../../external//usr/local/minc/lib/libznz.a(znzlib.o): In function `znztell':
znzlib.c:(.text+0x4a3): undefined reference to `gztell'
../../external//usr/local/minc/lib/libznz.a(znzlib.o): In function `znzputs':
znzlib.c:(.text+0x4f7): undefined reference to `gzputs'
../../external//usr/local/minc/lib/libznz.a(znzlib.o): In function `znzgets':
znzlib.c:(.text+0x55b): undefined reference to `gzgets'
../../external//usr/local/minc/lib/libznz.a(znzlib.o): In function `znzflush':
znzlib.c:(.text+0x5c5): undefined reference to `gzflush'
../../external//usr/local/minc/lib/libznz.a(znzlib.o): In function `znzeof':
znzlib.c:(.text+0x623): undefined reference to `gzeof'
../../external//usr/local/minc/lib/libznz.a(znzlib.o): In function `znzputc':
znzlib.c:(.text+0x677): undefined reference to `gzputc'
../../external//usr/local/minc/lib/libznz.a(znzlib.o): In function `znzgetc':
znzlib.c:(.text+0x6f5): undefined reference to `gzgetc'
../../external//usr/local/minc/lib/libznz.a(znzlib.o): In function `znzprintf':
znzlib.c:(.text+0x798): undefined reference to `gzprintf'
collect2: error: ld returned 1 exit status
minctools/conversion/CMakeFiles/nii2mnc.dir/build.make:105: recipe for target 'minctools/conversion/nii2mnc' failed
make[2]: *** [minctools/conversion/nii2mnc] Error 1
CMakeFiles/Makefile2:5017: recipe for target 'minctools/conversion/CMakeFiles/nii2mnc.dir/all' failed
make[1]: *** [minctools/conversion/CMakeFiles/nii2mnc.dir/all] Error 2
Makefile:160: recipe for target 'all' failed
make: *** [all] Error 2