[MINC-users] Problems with volume/slice normalization and labels

[Andrew Wood]

Hi Gabriel,

One way is to filter your label volumes through mincreshape, making sure
the image_range and valid_range are the same:

$ mincreshape in.mnc \
-normalize \
-unsigned -byte \
-image_range 0 255 \
-valid_range 0 255 \
fixed.mnc

- Andrew

On Tue, Feb 16, 2016 at 12:09 PM, Gabriel A. Devenyi <gdevenyi at gmail.com>
wrote:

> Hi minc-users,
>
> I have some labels that via some step in minc-toolkit had an introduction
> of volume and/or slice-selective normalization.
>
> This is causing serious issues *sometimes* in some processing.
>
> Can anyone recommend a way to successfully strip away all the normalization
> from the file so they are true labels?
>
> --
> Gabriel A. Devenyi B.Eng. Ph.D.
> Research Computing Associate
> Computational Brain Anatomy Laboratory
> Cerebral Imaging Center
> Douglas Mental Health University Institute
> McGill University
> t: 514.761.6131x4781
> e: gdevenyi at gmail.com
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>