[MINC-users] TIFF to MINC?

[Vladimir S. FONOV]

c2d input.tiff output.mnc

(c2d from minc-toolkit-v2)

On 2016-12-05 02:18 PM, Gabriel A. Devenyi wrote:
> Thanks Bert,
>
> That's the other idea I'm working with.
>
> --
> Gabriel A. Devenyi B.Eng. Ph.D.
> Research Computing Associate
> Computational Brain Anatomy Laboratory
> Cerebral Imaging Center
> Douglas Mental Health University Institute
> McGill University
> t: 514.761.6131x4781
> e: gabriel.devenyi at mcgill.ca
>
> On Mon, Dec 5, 2016 at 2:15 PM, Robert Durham Vincent, Mr <
> robert.d.vincent at mcgill.ca> wrote:
>
>> Gabriel,
>>
>> I would try extracting the TIFF pixels using something like imagemagick,
>> then use rawtominc to convert to minc.
>>
>>     -bert
>>
>> On Mon, Dec 5, 2016 at 2:11 PM, Sulantha Sanjeewa <sulantha.s at gmail.com>
>> wrote:
>>
>>> I haven’t done it but probably pyminc would be able to help.
>>> Opena dummy MINC file.
>>> Replace the internal data structure from the new matrix made from your
>>> images.
>>> Write back
>>>
>>> Should work (theoretically at least)
>>> Sulantha.
>>>
>>>
>>> On December 5, 2016 at 1:11:42 PM, Gabriel A. Devenyi (
>>> gabriel.devenyi at mcgill.ca) wrote:
>>>
>>> I've got my hands on some autofluorescence data from a two-photon
>>> microscope that I'd like to convert into a MINC volume. Right now I have a
>>> stack aligned TIFF files.
>>>
>>> Has anyone tried something like this before and can share their process,
>>> otherwise, I'll try and document the final conversion process I figure
>>> out.
>>>
>>> Thanks.
>>>
>>> --
>>> Gabriel A. Devenyi B.Eng. Ph.D.
>>> Research Computing Associate
>>> Computational Brain Anatomy Laboratory
>>> Cerebral Imaging Center
>>> Douglas Mental Health University Institute
>>> McGill University
>>> t: 514.761.6131x4781
>>> e: gabriel.devenyi at mcgill.ca
>>> _______________________________________________
>>> MINC-users at bic.mni.mcgill.ca
>>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>> _______________________________________________
>>> MINC-users at bic.mni.mcgill.ca
>>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>>
>>
>>
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>


-- 
Best regards,

  Vladimir S. FONOV ~ vladimir.fonov <at> gmail.com