[MINC-users] TIFF to MINC?

[Gabriel A. Devenyi]

Thanks Bert,

That's the other idea I'm working with.

--
Gabriel A. Devenyi B.Eng. Ph.D.
Research Computing Associate
Computational Brain Anatomy Laboratory
Cerebral Imaging Center
Douglas Mental Health University Institute
McGill University
t: 514.761.6131x4781
e: gabriel.devenyi at mcgill.ca

On Mon, Dec 5, 2016 at 2:15 PM, Robert Durham Vincent, Mr <
robert.d.vincent at mcgill.ca> wrote:

> Gabriel,
>
> I would try extracting the TIFF pixels using something like imagemagick,
> then use rawtominc to convert to minc.
>
>     -bert
>
> On Mon, Dec 5, 2016 at 2:11 PM, Sulantha Sanjeewa <sulantha.s at gmail.com>
> wrote:
>
>> I haven’t done it but probably pyminc would be able to help.
>> Opena dummy MINC file.
>> Replace the internal data structure from the new matrix made from your
>> images.
>> Write back
>>
>> Should work (theoretically at least)
>> Sulantha.
>>
>>
>> On December 5, 2016 at 1:11:42 PM, Gabriel A. Devenyi (
>> gabriel.devenyi at mcgill.ca) wrote:
>>
>> I've got my hands on some autofluorescence data from a two-photon
>> microscope that I'd like to convert into a MINC volume. Right now I have a
>> stack aligned TIFF files.
>>
>> Has anyone tried something like this before and can share their process,
>> otherwise, I'll try and document the final conversion process I figure
>> out.
>>
>> Thanks.
>>
>> --
>> Gabriel A. Devenyi B.Eng. Ph.D.
>> Research Computing Associate
>> Computational Brain Anatomy Laboratory
>> Cerebral Imaging Center
>> Douglas Mental Health University Institute
>> McGill University
>> t: 514.761.6131x4781
>> e: gabriel.devenyi at mcgill.ca
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>
>