[MINC-users] Outputting overlay of co-registered MINC files directly to a file

[Paul GRAVEL]

Once again, Many Thanks Claude and Vladimir for your replies!

Just what I was looking for!
Although, I ended up using minc_qc.pl ;-)!

Best,

Paul

On Tue, 20 Jan 2015, Vladimir S. FONOV wrote:

> Hello,
>
> you can use minc_qc.pl script for that , something like that:
>
> minc_qc.pl  t1w.mnc t1w_qc.jpg
>       --mask  overlay.mnc --title "subject_1 --image-range 5 100
> --mask-range 5 20 --big
>
>
> will produce  a series of pictures with overlay of t1w scan (in gray) and
> overlay.mnc (in red)
>
>
>
>
>
> On Tue, Jan 20, 2015 at 3:24 PM, Paul GRAVEL <pgravel at bic.mni.mcgill.ca>
> wrote:
>
>> Dear All,
>>
>> I am currently doing a bunch of co-registrations (PET to MR , and PET to
>> STX space) and I was wondering if there was an alternative to opening
>> register everytime to visually inspect the co-registration between the two
>> volumes, i.e. is it possible (does a tool exist?) to output the overlayed
>> volumes (for a few sllices only), as shown in the right-hand column of
>> register, directly to an image file (e.g. .png), without having to open
>> register? One could then scroll through the series of the overlaid slices
>> for a quality check, or put these images (while running a script) in a
>> quality assessment report.
>> I vaguely remember old tools/scripts (either do_mritopet or do_mritotal)
>> doing something similar.
>> Any ideas?
>> Best Regards,
>> Paul
>> _______________________________________________
>> MINC-users at bic.mni.mcgill.ca
>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>
>
>
>
> -- 
> Best regards,
>
> Vladimir S. Fonov ~ vladimir <dot> fonov <at> gmail <dot> com
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>