[MINC-users] CIVET-1.1.12 and -model icbm152nl_09s

[Claude LEPAGE]

Hi Gabriel,


> I'm trying to run CIVET-1.1.12 with the more up-to-date 09a symmetric model
> included with it, however the verify_image stage fails with:
> 
> Overlay /opt/quarantine/CIVET/1.1.12/build/share/mni-models//mni_icbm152_t1_tal_nlin_sym_09a_mask.obj
> is not a file
> 
> I see that the mni_ADNI and symmetric_VI models have obj files but the
> other model files are missing. Are these files available? Can anyone share
> them?

You should post such issues at civet-users at bic.mni.mcgill.ca.

Where are you running this quarantine from? It is not a quarantine that
I installed. It seems to have been copied from somewhere else or installed
by someone else. Up-to-date and complete versions are available in CBRAIN.

The file that you are missing is used to create the quality control image
only. It is not used for calculations, so missing it will not alter the 
results. This .obj is used to trace the outline of the model's mask in 
the top 2 rows of the verify.png image (red lines). You can replace the
missing sym_09a_mask.obj by the symmetric_VI one. Both are in MNI ICBM152
space. 

Claude