[MINC-users] Building minc-toolkit for debugging

[Andrew Wood]

Hi Vlad,

My issue wasn't with the missing netcdf library (I already had a copy lying
around that I dropped into where the download was supposed to go) but
rather getting executables suitable for use in gdb.

I'm less than a CMake novice, so I'm still confused.. I normally specify
cmake variables on the command like "-MCMAKE_BUILD_TYPE=Debug" but you're
suggesting a lot of options, so I'm trying to drop them in a config file.

If I understand CMake correctly, I should drop these settings at the end of
the CMakeLists.txt file in the root directory. To satisfy CMake syntax, I
copy/pasted from your email then translated everything to SET calls:

SET( BUILD_TESTING ON )
SET( CMAKE_BUILD_TYPE Debug )
etc...

Then I did the standard `mkdir build; cd build; cmake ..` and everything
happily built (the netcdf download worked this time - thanks!). The
executables still aren't suited for gdb though:

$ gdb build_debug/mni_autoreg/minctracc/minctracc
...
Reading symbols from build_debug/mni_autoreg/minctracc/minctracc...(no
debugging symbols found)...done.
(gdb)

I must have put those settings in the wrong place?

Thanks,
Andrew






On Wed, Apr 15, 2015 at 12:31 AM, Vladimir S. Fonov <
vladimir.fonov at gmail.com> wrote:

> Hello,
>
> I noticed that URL of netcdf library changed - I updated it in the
> repository.
> Otherwise it compiles fine with the following settings:
>
>
> BUILD_TESTING:BOOL=ON
> CMAKE_BUILD_TYPE:STRING=Debug
> CMAKE_INSTALL_PREFIX:PATH=/opt/minc
> GLUT_X11_LIBRARY:FILEPATH=/usr/lib/x86_64-linux-gnu/libX11.so
> GLUT_Xi_LIBRARY:FILEPATH=/usr/lib/x86_64-linux-gnu/libXi.so
> GLUT_Xmu_LIBRARY:FILEPATH=/usr/lib/x86_64-linux-gnu/libXmu.so
> MNI_AUTOREG_OLD_AMOEBA_INIT:BOOL=ON
> MT_BUILD_C3D:BOOL=ON
> MT_BUILD_ITK_TOOLS:BOOL=ON
> MT_BUILD_LITE:BOOL=OFF
> MT_BUILD_MINC_ANTS:BOOL=ON
> MT_BUILD_SHARED_LIBS:BOOL=ON
> MT_BUILD_VISUAL_TOOLS:BOOL=ON
> MT_USE_OPENMP:BOOL=ON
> USE_SYSTEM_FFTW3F:BOOL=OFF
> USE_SYSTEM_GLUT:BOOL=OFF
> USE_SYSTEM_GSL:BOOL=OFF
> USE_SYSTEM_HDF5:BOOL=OFF
> USE_SYSTEM_ITK:BOOL=OFF
> USE_SYSTEM_NETCDF:BOOL=OFF
> USE_SYSTEM_PCRE:BOOL=OFF
> USE_SYSTEM_ZLIB:BOOL=OFF
>
>
>
>
> On 15-04-14 05:36 PM, Andrew Wood wrote:
>
>> Hi all,
>>
>> I'm having trouble getting the minc-toolkit built with debugging symbols
>> (specifically trying to dive into minctracc).
>>
>> I've tried setting CMAKE_BUILD_TYPE to Debug and DEBUG.
>>
>> Am I missing something obvious?
>>
>> Thanks,
>> Andrew
>> _______________________________________________
>> MINC-users at bic.mni.mcgill.ca
>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>
>>
> _______________________________________________
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>