[MINC-users] Building bicpl-1.6.4 on Ubuntu 12.04

Andrew Wood andrew at biospective.com
Wed Jun 4 12:17:14 EDT 2014


Got it! Initially I had libnetpbm9, libnetpbm9-dev and libnetpbm10
installed. Now I've just got libnetpbm10 and libnetpbm10-dev.

I had to switch the configure flag from --with-image-ppm
to --with-image-netpbm; it compiles, and will hopefully still work like it
used to.

As for EBTKS, are you sure it's a prereq of bicpl?

Here is the order that my script builds the packages:
1. netcdf
2. hdf5
3. minc
4. bicpl
...

Thanks,
Andrew





On Wed, Jun 4, 2014 at 10:53 AM, Andrew Janke <a.janke at gmail.com> wrote:

> On 5 June 2014 00:28, Andrew Wood <andrew at biospective.com> wrote:
> > So my configure command was really this:
> > ./configure --with-minc2 --prefix=/my/build/ --with-build-path=/my/build/
> > --with-image-ppm
> >
> > It may be worth noting that the script I use to build this stuff used to
> > work on Ubuntu 10.04.
> >
> > I'm looking at an old build log, and the gcc command which is currently
> > failing actually worked on 10.04 (i.e. it didn't have -lpbm either). So
> > something must have changed in the ppm/pbm libraries? Or perhaps I had
> > statically linked a library before which is currently trying to link
> > dynamically?
>
> Interesting. You are using --with-image-ppm with EBTKS and it builds
> correctly? With some combinations I have seen it build but fail
> silently and just not include the ppm part in EBTKS at which point you
> only notice something has broken with bicpl.
>
> I have just dug out my old prereq file. Seems there was a change.
>
> ubuntu-maverick: libnetcdf-dev libhdf5-serial-dev libnetpbm9-dev
> fftw-dev libgsl0-dev libgetopt-tabular-perl libmni-perllib-perl
> libxext-dev glutg3-dev imagemagick libtext-format-perl
>
> ubuntu-precise: libnetcdf-dev libhdf5-serial-dev libnetpbm10-dev
> fftw-dev libgsl0-dev libgetopt-tabular-perl libmni-perllib-perl
> libxext-dev imagemagick libtext-format-perl freeglut3-dev
>
> Note the change libnetpbm9-dev to libnetpbm10-dev.
>
>
>
> a
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>


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