[MINC-users] MINC tools for diffusion weighted images
Jon Pipitone
jon at pipitone.ca
Thu Sep 26 02:19:27 EDT 2013
Hi all,
What sorts of tools are there for working with diffusion weighted images
in MINC?
Specifically, my wish list includes tools enabling me to:
1. convert the DWI from our raw dicoms to minc format preserving
diffusion parameters
2. merge multiple DWI acquisitions for single subject
3. perform registration of the DWI image to a structural scan (updating
directions)
4. estimate a diffusion tensor
5. export the DWI (and DTI) volume to other well-known formats (nifti
or NRRD mostly) for further processing.
>From my searching so far it looks like there is a toolkit[1] for MINC
that should do most of the above, but I'm not sure if it is a) still
maintained, or b) available to the public (seems one must have a BIC
username to check out the source?). There is also the mincdti
program[2] but I believe that only estimates a tensor.
What are my other options? With the minc integration into ITK are there
perhaps ITK-based toolkits you could recommend?
Thanks!
Jon.
[1] http://www.bic.mni.mcgill.ca/~ilana/diffusion/diffusion_tools.html
[2] Mentioned here: http://en.wikibooks.org/wiki/MINC/Reference/MINC2.0_Users_Guide
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