[MINC-users] MINC to NIfTI label file conversion

[Julie Winterburn]

Thanks, that helps a lot! The only problem now is that not *all* of the
label values end up as integers. For example, in a label set with intended
values 1, 2, 4, 5, 6, the NIfTI file contains values 1.01176, 2, 4,
5.01176, 6.  Any idea why this might still be happening to only a few of
the numbers?

On 25 March 2013 13:14, Simon Eskildsen <eskild at gmail.com> wrote:

> Hi Julie,
>
> When converting from minc to nifti, I always do mincreshape -float before
> calling mnc2nii in order to avoid problems of intensity scaling.
> Perhaps this solves your problem?
>
> Simon
>
> On Mon, Mar 25, 2013 at 4:50 PM, Julie Winterburn <
> winterburn.julie at gmail.com> wrote:
>
> > Hi,
> >
> > I am having a problem converting MINC label files to NIfTI. The label
> file
> > in MINC format has integer values (1,2, etc). I am using <mnc2nii -short>
> > to convert, but when viewing the label file in fslview, the values are
> > non-integer (0.831373, 2.07843, etc.). The output is the same for
> <mnc2nii
> > -int>. Is there a way to maintain the values as integers in NIfTI?
> >
> > Thanks,
> > Julie
> > _______________________________________________
> > MINC-users at bic.mni.mcgill.ca
> > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> >
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