[MINC-users] MINC to NIfTI label file conversion

[Simon Eskildsen]

Hi Julie,

When converting from minc to nifti, I always do mincreshape -float before
calling mnc2nii in order to avoid problems of intensity scaling.
Perhaps this solves your problem?

Simon

On Mon, Mar 25, 2013 at 4:50 PM, Julie Winterburn <
winterburn.julie at gmail.com> wrote:

> Hi,
>
> I am having a problem converting MINC label files to NIfTI. The label file
> in MINC format has integer values (1,2, etc). I am using <mnc2nii -short>
> to convert, but when viewing the label file in fslview, the values are
> non-integer (0.831373, 2.07843, etc.). The output is the same for <mnc2nii
> -int>. Is there a way to maintain the values as integers in NIfTI?
>
> Thanks,
> Julie
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