[MINC-users] Cerebral hemisphere mask: ICBM minc atlas

[Simon Fristed Eskildsen]

Hi Aaryani,

I have a cerebrum mask for the ICBM152. It can be downloaded here:

http://person.hst.aau.dk/se/resources/ICBM152_cerebrum_mask.mnc.gz

It's generated using the cortical extraction method FACE from the
non-linear ICBM template. It should fit with the linear template as
well.
CSF in the larger sulci / fissures are not included in the mask. This
can probably be included by dilation (or closing) operations.

Simon

On Sat, May 21, 2011 at 9:56 AM, Andrew Janke <a.janke at gmail.com> wrote:
> Hi Aaryani
>
> On Sat, May 21, 2011 at 08:11, Aaryani Tipirneni <atipirne at stanford.edu> wrote:
>>  Could you please tell me if there is a cerebrum mask (i.e., excluding cerebellum and brain stem from the whole brain) that could be downloaded for the ICBM/MNI atlas.
>
> There is not one in the current released MINC packages. There is
> however one in a package of Louis Collins' called lobe_segment. I am
> not sure if this package will be released or not but you could
> certainly email Louis directly and ask for a copy of the package.
>
> Thanks
>
>
> Andrew