[MINC-users] build almost everything minc Makefile and git repository for EZminc

[Luis Concha]

Hi Michael.

I noticed that, too. I saw that the option make visual is not included
in the makefile, although it is on the help for it. All I did was add
a line:
visual : $(register) $(Display).

Regarding bicp, use make bicpl first, then make visual.

I hope this helps.

Luis



On Mon, Mar 28, 2011 at 11:48 AM, Keaser, Michael L
<MKeaser at umaryland.edu> wrote:
> Vladmir,
>
> I installed most of the minc packages with the makefile you provided. However, I am having trouble installing Register and Display. I am using Ubuntu 10.04
>
> I tried the command "make visual" and I get this message:
>
> make: *** No rule to make target `visual'.  Stop.
>
> At that point, i just tried to install Register and Display separately with the make command, and went into the respective directories to try and configure it. Each time i tried to configure with this line in Register,
>
> ./configure --prefix=/usr/local/minc -with-build-path=/usr/local/minc --with-minc2 --with-x  && \ make clean && \ make -j4 && \ make install
>
>  I get this error message: configure: error: cannot find required library bicpl
>
> On my system it says bicpl is located in: /usr/local/minc/src/bicpl-1.4.6/Include/bicpl
>
> I added that to the configure line, in it still says it cannot find it.
>
> I'm kind of stuck right now and lost. Any help would greatly be appreciated.
>
> Thanks,
>
> Michael
>
>
>
>
>
>
>
> ________________________________________
> From: minc-users-bounces at bic.mni.mcgill.ca [minc-users-bounces at bic.mni.mcgill.ca] On Behalf Of Vladimir S. FONOV [vladimir.fonov at gmail.com]
> Sent: Friday, March 04, 2011 4:43 PM
> To: MINC users mailing list
> Subject: [MINC-users] build almost everything minc Makefile and git     repository for EZminc
>
> Hello Everybody,
>
> in an effort to simplify minc installation I have made publicly
> available a "build almost everything minc" makefile:
>
> https://github.com/vfonov/EZminc/raw/master/build_quarantine/Makefile
>
> The main purpose of it is to build most of the publicly available minc
> tools inside a quarantine with minimum dependencies on the system
> libraries. So, everything is compiled statically.
>
> Following packages are built by default:
>
> netcdf-4.0.1 hdf5-1.8.6 minc-2.1.00 bicpl-1.4.6 ebtks-1.6.4
> oobicpl-0.4.4 N3-1.12.0 classify-1.1.0 conglomerate-1.6.6
> mni_autoreg-0.99.6 mni_perllib-0.08 mincblob-1.2.1 mincmorph-1.4
> ray_trace-1.0.3 glim_image-1.2 InsightToolkit-3.20.0 fftw-3.2.2
> cmake-2.8.4 gsl-1.14 Getopt-Tabular-0.3 ezminc-r83 netpbm-10.35.74
>
>
> following packages may also be built if needed:
>
> Register-1.4.0 Display-1.5.0
> fltk-1.3.x-r7725 vtk-5.6.1
>
> To use:
>
> make PREFIX=<location of your quarantine> TEMP=<location where packages
> will be built> PARALLEL_BUILD=-j<number of CPUs available> all
>
> Also, as you can notice I have created a clone of EZminc repository on
> the github:  https://github.com/vfonov/EZminc , hopefully it will be
> easier to use it this way.
>
>
> --
> Best regards,
>  Vladimir S. FONOV ~ v.s.fonov  <at> ilmarin.info
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>