[MINC-users] "register" command

[Lisa F. Akiyama]

Hi Andrew,

Thanks for the tip!
I edited the SetUpFreeSurfer.sh and "register" works now.


Best,
Lisa
 ______________________________
Lisa F. Akiyama
Research Study Assistant
Institute for Learning & Brain Sciences (I-LABS)
University of Washington

<lrisa87 at uw.edu>

P Please consider the environment before printing this e-mail.



On Wed, Jan 26, 2011 at 11:26 PM, Andrew Janke <a.janke at gmail.com> wrote:

> Ah, well then this is a PATH problem.
>
> Freesurfer installs its own entire install of an older version of MINC
> that will compete with your own MINC install.  You will have to modify
> your .bashrc or .cshrc so that your PATH variable puts the MINC path
> first.
>
> Good luck.
>
>
> a
>
> On 22 January 2011 08:25, Lisa F. Akiyama <lrisa87 at uw.edu> wrote:
> >>
> >> Hi Andrew,
> >>
> >> When I uninstalled Freesurfer and re-installed the newest
> Ubuntu-Maverick
> >> MINC package that you had just uploaded yesterday,
> >> register worked just fine.
> >> However, once I installed FreeSurfer again, the same errors appear and
> when
> >> I check the version of register, it is 1.3.5 now.
> >> I'm suspecting that this is so because the register that comes with
> >> FreeSurfer is an older version.
> >> When I run register with the -rgb option, I only get a funky black&white
> >> screen (please see attached).
> >> Is there a way to have both FreeSurfer and MINC on my workstation, but
> have
> >> the new functions of MINC (such as this register command) be newer?
> >> Shall I just remove/replace the MINC commands of Freesurfer?
> >>
> >> Thank you.
> >>
> >>
> >> Best,
> >> Lisa
> >> <lrisa87 at uw.edu>
> >>
> >> P Please consider the environment before printing this e-mail.
> >>
> >>
> >>
> >> On Thu, Jan 20, 2011 at 7:59 PM, Andrew Janke <a.janke at gmail.com>
> wrote:
> >>
> >>> > Apparently I am running register 1.3.5 (on Ubuntu 11.04).
> >>> > I tried installing freeglut3, but I had it already.
> >>>
> >>> Good good.
> >>>
> >>> > Is the issue related to the older version of register?
> >>>
> >>> It might be. In later releases of register the rendering mode is set
> >>> to RGB by default instead of indexed mode.
> >>>
> >>> If this is your problem, running it as such should help:
> >>>
> >>>   $ register -rgb ...
> >>>
> >>>
> >>> a
> >>> _______________________________________________
> >>> MINC-users at bic.mni.mcgill.ca
> >>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> >>>
> >>
> >>
> >
> > _______________________________________________
> > MINC-users at bic.mni.mcgill.ca
> > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> >
> >
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>