[MINC-users] "register" command

[Andrew Janke]

Ah, well then this is a PATH problem.

Freesurfer installs its own entire install of an older version of MINC
that will compete with your own MINC install.  You will have to modify
your .bashrc or .cshrc so that your PATH variable puts the MINC path
first.

Good luck.


a

On 22 January 2011 08:25, Lisa F. Akiyama <lrisa87 at uw.edu> wrote:
>>
>> Hi Andrew,
>>
>> When I uninstalled Freesurfer and re-installed the newest Ubuntu-Maverick
>> MINC package that you had just uploaded yesterday,
>> register worked just fine.
>> However, once I installed FreeSurfer again, the same errors appear and when
>> I check the version of register, it is 1.3.5 now.
>> I'm suspecting that this is so because the register that comes with
>> FreeSurfer is an older version.
>> When I run register with the -rgb option, I only get a funky black&white
>> screen (please see attached).
>> Is there a way to have both FreeSurfer and MINC on my workstation, but have
>> the new functions of MINC (such as this register command) be newer?
>> Shall I just remove/replace the MINC commands of Freesurfer?
>>
>> Thank you.
>>
>>
>> Best,
>> Lisa
>> <lrisa87 at uw.edu>
>>
>> P Please consider the environment before printing this e-mail.
>>
>>
>>
>> On Thu, Jan 20, 2011 at 7:59 PM, Andrew Janke <a.janke at gmail.com> wrote:
>>
>>> > Apparently I am running register 1.3.5 (on Ubuntu 11.04).
>>> > I tried installing freeglut3, but I had it already.
>>>
>>> Good good.
>>>
>>> > Is the issue related to the older version of register?
>>>
>>> It might be. In later releases of register the rendering mode is set
>>> to RGB by default instead of indexed mode.
>>>
>>> If this is your problem, running it as such should help:
>>>
>>>   $ register -rgb ...
>>>
>>>
>>> a
>>> _______________________________________________
>>> MINC-users at bic.mni.mcgill.ca
>>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>>
>>
>>
>
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