[MINC-users] dcm2mnc issues

[Alexandre CARMEL-VEILLEUX]

If decompression alone works, the dcmdjpeg tool from dcmtk can probabbly
be used directly and it's easily scriptable.

Alex

On Thu, Jul 29, 2010 at 11:06:42PM -0400, Dale Einarson wrote:
> Date: Thu, 29 Jul 2010 23:06:42 -0400
> From: Dale Einarson <dale at bic.mni.mcgill.ca>
> Subject: Re: [MINC-users] dcm2mnc issues
> To: MINC users mailing list <minc-users at bic.mni.mcgill.ca>
> X-Mailer: Apple Mail (2.1081)
> 
> Hi Ayman,
>  If Osirix+dcm2mnc  works then you could set up a dcmtk server and automate the conversion. ...If you need help doing this, I will be around next week (I have a working mac and linux installation for this )
> 
> Cheers!
> dale
> 
> 
> On Jul 28, 2010, at 1:06 PM, Ayman Oweida wrote:
> 
> > Hi Alex,
> > Thanks for your reply.
> > 
> > I tried the first option, but the same issue persisted.
> > 
> > I tried the second option and Osirix gave me  3 options for exporting: Export unchanged files Or Export Decompressed DICOM or Export Compressed DICOM in JPEG.  Only the second option worked, but with a minor issue.  I got a .mnc file and the volume looked fine, except that it was inverted.
> > Do I always have to decompress the dicom files in Osirix prior to issuing the dcm2mnc command ?
> > 
> > 
> > Thanks,
> > 
> > -Ayman
> > 
> > 
> > 
> > ________________________________________
> > From: minc-users-bounces at bic.mni.mcgill.ca [minc-users-bounces at bic.mni.mcgill.ca] On Behalf Of Alexandre CARMEL-VEILLEUX [acveilleux at mrs.mni.mcgill.ca]
> > Sent: Friday, July 23, 2010 4:07 PM
> > To: MINC users mailing list
> > Subject: Re: [MINC-users] dcm2mnc issues
> > 
> > Two ideas:
> > 
> > 1) If you're using my build for mac os X, try using
> > /usr/local/bic/bin/dcm2mnc
> > 
> > I think the Minc 1.5 version in /usr/local/mni/bin is broken tbh.
> > 
> > 2) Export the files from OsiriX and see if *those* will import...
> > 
> > Alex
> 
> 
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