[MINC-users] dcm2mnc issues

[Dale Einarson]

Hi Ayman,
 If Osirix+dcm2mnc  works then you could set up a dcmtk server and automate the conversion. ...If you need help doing this, I will be around next week (I have a working mac and linux installation for this )

Cheers!
dale


On Jul 28, 2010, at 1:06 PM, Ayman Oweida wrote:

> Hi Alex,
> Thanks for your reply.
> 
> I tried the first option, but the same issue persisted.
> 
> I tried the second option and Osirix gave me  3 options for exporting: Export unchanged files Or Export Decompressed DICOM or Export Compressed DICOM in JPEG.  Only the second option worked, but with a minor issue.  I got a .mnc file and the volume looked fine, except that it was inverted.
> Do I always have to decompress the dicom files in Osirix prior to issuing the dcm2mnc command ?
> 
> 
> Thanks,
> 
> -Ayman
> 
> 
> 
> ________________________________________
> From: minc-users-bounces at bic.mni.mcgill.ca [minc-users-bounces at bic.mni.mcgill.ca] On Behalf Of Alexandre CARMEL-VEILLEUX [acveilleux at mrs.mni.mcgill.ca]
> Sent: Friday, July 23, 2010 4:07 PM
> To: MINC users mailing list
> Subject: Re: [MINC-users] dcm2mnc issues
> 
> Two ideas:
> 
> 1) If you're using my build for mac os X, try using
> /usr/local/bic/bin/dcm2mnc
> 
> I think the Minc 1.5 version in /usr/local/mni/bin is broken tbh.
> 
> 2) Export the files from OsiriX and see if *those* will import...
> 
> Alex