[MINC-users] mincconvert error

[Audette, Michel]

Hi again, 

making progress with mincconcat, but now I have a really large minc2 file that mincinfo and Display don't seem to like


maudette at icaw164059:/data> mincinfo  full.mnc
(from miopen): Unable to open file 'full.mnc'
mincinfo: Error opening file "full.mnc"
maudette at icaw164059:/data> ls -l full.mnc
-rwxr-xr-x  1 maudette users 4294967295 2008-10-16 17:21 full.mnc

maudette at icaw164059:/data> Display full.mnc
Inputting full.mnc.
(from miopen): Unable to open file 'full.mnc'
Error: opening MINC file "full.mnc".
Error loading full.mnc

I just recompiled my minc tools as well as Display software with hdf5 1.6.6... 

Also, my student had implemented a perl script in the past that did this:
  system("minc_modify_header -dinsert zspace:step=0.2 -dinsert yspace:step=0.2 -dinsert xspace:step=0.2 $output");

and minc_modify_header apparently does not deal with minc2. 
maudette at icaw164059:/data> minc_modify_header -dinsert zspace:step=0.2 -dinsert yspace:step=0.2 -dinsert xspace:step=0.2 full.mnc
(from miopen): Can't write compressed file
ncredef: ncid -1: Not a netCDF id
micreate_group_variable: MINC package entry point
...
ncclose: ncid -1: Not a netCDF id
Or does it? (It won't take -2 as an option).

Best wishes, 

Michel

-----Original Message-----
From: Claude LEPAGE [mailto:claude at bic.mni.mcgill.ca]
Sent: Thu 10/16/2008 4:29 PM
To: Audette, Michel
Subject: [MINC-users] mincconvert error
 

Hi Michel,

We are using hdf5-1.6.6 and hdf5-1.6.7 here without problems. It's possible
that 1.6.1 was buggy. Good for you if you could resolve your problem. 

Claude