[MINC-users] minc-2.0.15 build error

[EJ Nikelski]

Hi Alex,

    I suppose I owe you a cup of coffee!  Now, but really, why should
I need to 'sudo' my 'make check'?  I *do* have write permissions to
all of my build subdirs ... so I'm confused ... but happy that the
'make check' completes.

Thanks again,

-Jim



On Thu, May 22, 2008 at 1:44 PM, Alexandre CARMEL-VEILLEUX
<acveilleux at mrs.mni.mcgill.ca> wrote:
> For what it's worth:
>
> PASS: testminctools.sh
> ===================
> All 17 tests passed
> ===================
> make[2]: Nothing to be done for `check-am'.
> mrspc [/localscratch/compile/minc-2.0.15] mincmath -version
> program: 2.0.15
> libminc: 2.0.15
> netcdf : "3.6.2" of Apr  1 2008 14:09:41 $
> HDF5   : 1.6.7
> mrspc [/localscratch/compile/minc-2.0.15] file /usr/local/bic/bin/mincmath
> /usr/local/bic/bin/mincmath: Mach-O 64-bit executable x86_64
> mrspc [/localscratch/compile/minc-2.0.15]
>
>        And now the useful suggestion: Does the user running make check
> have write permissions over the directories?
>
> Alex
>
> On Fri, May 23, 2008 at 12:14:04AM +1000, Andrew Janke wrote:
>> Date: Fri, 23 May 2008 00:14:04 +1000
>> From: Andrew Janke <a.janke at gmail.com>
>> Subject: Re: [MINC-users] minc-2.0.15 build error
>> To: MINC users mailing list <minc-users at bic.mni.mcgill.ca>
>>
>> Hi Jim,
>>
>> I have tried to reproduce this error on another leopard machine but to
>> no avail...  'make check' works fine.
>>
>> Have you made any progress on this yourself?  The machine I am using
>> has a 64bit build of hdf/netcdf that Alexandre did, are you also
>> building 64 bit of 32 bit?
>>
>>
>> a
>>
>> On Sun, May 18, 2008 at 1:57 AM, EJ Nikelski <nikelski at bic.mni.mcgill.ca> wrote:
>> >
>> >   For reasons that I would rather not get into, I found myself
>> > rebuilding minc2 on my Intel mac (os x 10.5).  Although I'm certain
>> > that this worked previously, I now get an error during "make check" --
>> > specifically:
>> >
>> > Testing icv_dim1
>> > Testing icv_fillvalue
>> > PASS: run_test2.sh
>> > PASS: xfmconcat_01.sh
>> > PASS: xfmconcat_02.sh
>> > Assertion failed: (extent != 0), function px_get, file posixio.c, line 412.
>> > /bin/sh: line 1: 66090 Abort trap              ${dir}$tst
>> > FAIL: mincapi
>> > ==================================
>> > 1 of 5 tests failed
>> > Please report to a.janke at gmail.com
>> > ==================================
>> >
>> >   I've done some snooping, and the problem is related to this bit of
>> > code in mincapi.c  ...
>> >
>> >  /* Try to open the file for write - should fail.
>> >   */
>> >  fd2 = miopen(ip->name, NC_WRITE);
>> >  if (fd2 >= 0) {
>> >    FUNC_ERROR("miopen");
>> >  }
>> >
>> >   The call to miopen does indeed fail, but instead of returning, it
>> > fails on the assertion in posixio.c.   Andrew, given that you've
>> > dutifully attached your name to the error message, I suppose that you
>> > get first kick at the can.  What do you think?  BTW - I'm building
>> > minc2 with hdf5-1.6.7 and netcdf-3.6.2.
>>
>>
>>
>> --
>> Andrew Janke (a.janke at gmail.com || http://a.janke.googlepages.com/)
>> Canberra->Australia +61 (402) 700 883
>> _______________________________________________
>> MINC-users at bic.mni.mcgill.ca
>> http://www2.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www2.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>



-- 
=================================
Jim Nikelski, Ph.D.
Postdoctoral Research Fellow
Bloomfield Centre for Research in Aging
Lady Davis Institute for Medical Research
Sir Mortimer B. Davis - Jewish General Hospital
McGill University
Tel: (514) 340-8222 x 2298
Fax: (514) 340-8295