[MINC-users] minc-2.0.15 build error

[Alexandre CARMEL-VEILLEUX]

For what it's worth:

PASS: testminctools.sh
===================
All 17 tests passed
===================
make[2]: Nothing to be done for `check-am'.
mrspc [/localscratch/compile/minc-2.0.15] mincmath -version
program: 2.0.15
libminc: 2.0.15
netcdf : "3.6.2" of Apr  1 2008 14:09:41 $
HDF5   : 1.6.7
mrspc [/localscratch/compile/minc-2.0.15] file /usr/local/bic/bin/mincmath
/usr/local/bic/bin/mincmath: Mach-O 64-bit executable x86_64
mrspc [/localscratch/compile/minc-2.0.15] 

	And now the useful suggestion: Does the user running make check
have write permissions over the directories?

Alex

On Fri, May 23, 2008 at 12:14:04AM +1000, Andrew Janke wrote:
> Date: Fri, 23 May 2008 00:14:04 +1000
> From: Andrew Janke <a.janke at gmail.com>
> Subject: Re: [MINC-users] minc-2.0.15 build error
> To: MINC users mailing list <minc-users at bic.mni.mcgill.ca>
> 
> Hi Jim,
> 
> I have tried to reproduce this error on another leopard machine but to
> no avail...  'make check' works fine.
> 
> Have you made any progress on this yourself?  The machine I am using
> has a 64bit build of hdf/netcdf that Alexandre did, are you also
> building 64 bit of 32 bit?
> 
> 
> a
> 
> On Sun, May 18, 2008 at 1:57 AM, EJ Nikelski <nikelski at bic.mni.mcgill.ca> wrote:
> >
> >   For reasons that I would rather not get into, I found myself
> > rebuilding minc2 on my Intel mac (os x 10.5).  Although I'm certain
> > that this worked previously, I now get an error during "make check" --
> > specifically:
> >
> > Testing icv_dim1
> > Testing icv_fillvalue
> > PASS: run_test2.sh
> > PASS: xfmconcat_01.sh
> > PASS: xfmconcat_02.sh
> > Assertion failed: (extent != 0), function px_get, file posixio.c, line 412.
> > /bin/sh: line 1: 66090 Abort trap              ${dir}$tst
> > FAIL: mincapi
> > ==================================
> > 1 of 5 tests failed
> > Please report to a.janke at gmail.com
> > ==================================
> >
> >   I've done some snooping, and the problem is related to this bit of
> > code in mincapi.c  ...
> >
> >  /* Try to open the file for write - should fail.
> >   */
> >  fd2 = miopen(ip->name, NC_WRITE);
> >  if (fd2 >= 0) {
> >    FUNC_ERROR("miopen");
> >  }
> >
> >   The call to miopen does indeed fail, but instead of returning, it
> > fails on the assertion in posixio.c.   Andrew, given that you've
> > dutifully attached your name to the error message, I suppose that you
> > get first kick at the can.  What do you think?  BTW - I'm building
> > minc2 with hdf5-1.6.7 and netcdf-3.6.2.
> 
> 
> 
> -- 
> Andrew Janke (a.janke at gmail.com || http://a.janke.googlepages.com/)
> Canberra->Australia +61 (402) 700 883
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
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