[MINC-users] Linker errors on OS X Tiger when compiling ITK MINC2ImageIO

[Thomas Mansi]

Hi Andrew,

Thank you for your tip! I was not aware about the CMake config for  
MINC, sorry. I always compiled it with the configure/make/make  
install ancestral method and never checker for that new method.

So, I recompiled MINC2 from scratch, using CMake, with -fno-common  
option, and it worked, thanks! The first problem is solved.

However, when I tried to compile ITK against it I obtained the same  
error



[ 95%] Building CXX object Code/Review/CMakeFiles/ITKIOMINC2.dir/ 
itkMINC2ImageIO.o[ 95%] Building CXX object Code/Review/CMakeFiles/ 
ITKIOMINC2.dir/itkMINC2ImageIOFactory.oLinking CXX shared  
library ../../bin/libITKIOMINC2.dylibld: common symbols not allowed  
with MH_DYLIB output format with the -multi_module option/Users/ 
tmansi/local/imaging/minc/install/lib/libminc2.a(hdf_convenience.o)  
definition of common __m2_list (size 16)/Users/tmansi/local/imaging/ 
minc/install/lib/libminc2.a(minc_globdef.o) definition of common  
_minc_call_depth (size 16)/Users/tmansi/local/imaging/minc/install/ 
lib/libminc2.a(minc_globdef.o) definition of common _minc_trash_var  
(size 16)/usr/bin/libtool: internal link edit command failedmake[2]:  
*** [bin/libITKIOMINC2.3.3.0.dylib] Error 1make[1]: *** [Code/Review/ 
CMakeFiles/ITKIOMINC2.dir/all] Error 2make: *** [all] Error 2




I tried with/without -fno-common option for MINC2 and ITK, without  
success... I enabled the ITK_USE_REVIEW and properly set the minc  
path, but nothing, always the same error.

By the way, I don't really understand the link with the problem  
raised by Jim, I am sorry. Should I had the #if ... #endif code  
somewhere to fix the problem?

Thank you so much for your help,

Best regards,
Thomas


Le 6 avr. 08 à 19:47, Andrew Janke a écrit :
> On Sun, Apr 6, 2008 at 6:10 AM, Thomas Mansi  
> <thomas_mansi at yahoo.fr> wrote:
>>  I would like to test the MINC IO factory of ITK but I am  
>> experiencing
>>  some linking problems when compiling the tools.
>>  I am on Mac OS X Tiger (32bits), HDF5 v 1.6.1 and here is what I did
>>  so far.
>>  + I successfully compiled and installed netcdf 1.6.2 with -fno- 
>> common
>>  option
>>  + I successfully compiled minc 2.0.15 without -fno-common option.
>>  With -fno-common, I have the following linker error:
>
> Hi Tomas,
>
> Just a quick question, are you using Cmake for the MINC build or the
> GNU autoconf stuff?  (ie: configure).
>
> As for the ecattominc problem I will take a bet that this is related
> to Jims post that I just replied to (but haven't checked). In any case
> when I build MINC2.X for ITK I generally build it using the
> CMakeLists.txt file and use cmake.
>
>
> -- 
> Andrew Janke (a.janke at gmail.com || http://a.janke.googlepages.com/)
> Canberra->Australia +61 (402) 700 883
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www2.bic.mni.mcgill.ca/mailman/listinfo/minc-users