[MINC-users] mincconvert -2 error

[Audette, Michel]

Hi folks, 

looks like I got rid of the problem with a more recent version of minc software and hdf version 1.6.7. Not sure which one of the two did it... 

Perhaps this solution is relevant to someone in this community. 

Cheers, 

Michel

Michel Audette, Ph.D.
Innovation Center Computer Assisted Surgery (ICCAS)
Semmelweisstraße 14
Leipzig, Germany
Phone: ++49 (0) 341 / 97 - 1 20 13
Fax: ++49 (0) 341 / 97 - 1 20 09


-----Original Message-----
From: minc-users-bounces at bic.mni.mcgill.ca on behalf of Audette, Michel
Sent: Wed 4/2/2008 10:09 AM
To: MINC users mailing list
Subject: [MINC-users] mincconvert -2 error
 
Hi all, 

I'm trying to get mincconvert to work on mnc files, to produce mnc2, and I'm seeing the following: 

maudette at icaw164201:~/data/data/heartData/mincdata/01446397_mnc> mincconvert -2 heartMarkersClass0a_iso_distlt5.mnc heartMarkersClass0a_iso_distlt5.mnc2 -clob
HDF5-DIAG: Error detected in HDF5 library version: 1.6.1 thread 0.  Back trace follows.
  #000: H5F.c line 3191 in H5Fclose(): decrementing file ID failed
    major(07): Atom layer
    minor(16): Unable to close file
  #001: H5F.c line 3119 in H5F_close(): unable to flush cache
    major(08): Meta data cache layer
    minor(36): Unable to flush data from cache
  #002: H5F.c line 2881 in H5F_flush(): low level flush failed
    major(05): Low-level I/O layer
    minor(23): Write failed
  #003: H5FD.c line 3265 in H5FD_flush(): driver flush request failed
    major(22): Virtual File Layer
    minor(27): Unable to initialize object
  #004: H5FDsec2.c line 822 in H5FD_sec2_flush(): unable to extend file properly
    major(05): Low-level I/O layer
    minor(21): Seek failed

Has anyone seen this before? Is there a simple fix? 

Thanks for your kind attention. 

Cheers,

Michel

Michel Audette, Ph.D.
Innovation Center Computer Assisted Surgery (ICCAS)
Semmelweisstraße 14
Leipzig, Germany
Phone: ++49 (0) 341 / 97 - 1 20 13
Fax: ++49 (0) 341 / 97 - 1 20 09