[MINC-users] conversion to analyze problem

[Najmeh Khalili M.]

Hi,

Yes I have too.
I did something like:
             fslswapdim data.nii.gz x -y z flipped_data.nii.gz
to correct the left-right flip problem.

Hope this helps,
Naj


On Fri, 7 Sep 2007, Walker, Lindsay (NIH/NICHD) [V] wrote:

> I need to convert some minc images to analyze format.  I have been using
> the mnc2nii tool from minc-1.5.1 with the -analyze option.
>
>
>
> The images I converted have an indicator dot on the anatomical right of
> the image.  When I run the minc to analyze conversion program, the
> resulting analyze image shows the indicator dot on the anatomical left.
> So the program appears to be flipping the labels for the left and right.
>
>
>
> I have tried opening the analyze image with multiple pieces of software
> to make sure it is not just a display issue (i.e. radiological versus
> neurological coordinates).  The left and right labels appear to be
> incorrect using fslview, medx and mipav.
>
>
>
> Has anyone else encountered or noticed this problem?
>
>
>
> Thank you.
>
>
>
> Lindsay Walker.
>
>
>
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>

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