[MINC-users] Non-linear registration of two 2D slices

[Thomas Mansi]

Dear MINC-users,

Knowing the efficiency of the minc-tools to co-register two 3D volumes, 
I was wondering if it was possible to apply minctracc or any other tool 
to efficiently co-register two 2D slices, non-linearly.

Concretely, I am trying to register a 2D Nissl-stained histological 
section to a 2D high-resolution T1-MRI slice. I tried nlpfit and 
minctracc (with and without masks) but I didn't get any satisfactory 
results. Moreover, -mi and -xcorr options gave exactly the same results, 
which is quite strange, isn't it?

Do you know a way to non-linearly register two 2D slices? BicWiki says 
that there is a -2D-non-lin option that can be given to minctracc. But 
it seems to have disappeared since my version of the program does not 
recognise it (0.99.2).

Many thanks in advance for your help,
Best regards,

Thomas Mansi

	

	
		
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