[MINC-users] rawtominc & nu_correct difficulties

[Vladimir FONOV]

Hello ,

> On 8/1/07, Audette, Michel <Michel.Audette at medizin.uni-leipzig.de> wrote:
> > Dear folks,
> >
> > subsequent to yesterday's discussion, I'm trying to run nu_correct on a volume converted from tiff to raw to minc, as the volume has significant intensity inhomogeneity, but there is apparently something that I've neglected to do in the conversion. See below, where I've used some of Vladimir Fonov's parameters.
> >
> > maudette at icaw164201:~/data/ENTdata> cat HumanS16885_Stack.gray | rawtominc -clobber -byte -range 0 255 -orange 0 255 -real_range 0 255 -unsigned -zyx HumanS16885_Stack2.mnc 340 366 489
> > maudette at icaw164201:~/data/ENTdata> nu_correct  HumanS16885_Stack2.mnc HumanS16885_Stack2_nuc.mnc
> > nu_estimate_np_and_em: crashed while running volume_stats (termination status=11)
> > nu_correct: crashed while running nu_estimate_np_and_em (termination status=65280)
> >

Maybe you have to specify real coordinates:

rawtominc ........ -xstart <X> -ystart <Y> -zstart <Z> -xstep <...>
-ystep <...> -zstep <...>

-- 
Best regards,
 Vladimir S. Fonov ~ vladimir.fonov <at> gmail.com