[MINC-users] Bug in mni_autoreg-0.98v ?

[Simon Fristed Eskildsen]

Yes, that was also my solution.
Since we're correcting the perl scripts, I'm slightly annoyed by the way 
mritotal handles logging. Somewhere after version 0.98r mritotal has 
considered stdout as an open filehandle for logging, which means that it 
is not possible to pipe stdout from mritotal:
    mritotal mri.mnc mri.xfm > test.log
    self_announce: if supplied, $log must be an open filehandle at 
/gruppe/ad_mri/Opteron/pack/bin/mritotal line 571
Removing the following from mritotal solves the problem:
    &self_announce("STDOUT") if $Verbose && ! -t "STDOUT";
I realize that the filehandle check is in the self_announce function, 
but i am reluctant to change anything in the mni_perllib.
Maybe a commandline option to mritotal for handling logging would be in 
order?

Best regards
Simon Eskildsen
Andrew Janke wrote:

>Thanks for the bug reports.
>
>This is a harbinger from previous versions when mni_perllib was
>included in mni_autoreg.  The simple fix is to simply edit autocrop
>and change the following.
>
>ie: from this:
>
>   use MNI::FileUtilities qw( check_output_dirs split_path );
>
>to
>
>   use MNI::FileUtilities qw( check_output_dirs );
>   use MNI::PathUtilities qw( split_path );
>
>
>a
>
>On 3/15/06, Oliver Winz <o.winz at fz-juelich.de> wrote:
>  
>
>>Hi Simon,
>>
>>i have the same bug today on a Mac OS 10.4 system.
>>Please can you explain me how to remove the split_path dependency.
>>
>>Greetings,
>>Oliver
>>    
>>
>>>I just installed the latest autoreg (0.98v) and noticed a change in
>>>autocrop, which included a dependency on the method "split_path" being
>>>exported by the MNI::FileUtilities perl module from the mni_perllib.
>>>Because of this autocrop fails, as the "split_path" method is exported
>>>by the MNI::PathUtilities module. By removing the split_path dependency
>>>autocrop runs fine. Am I missing something, or is this a bug?
>>>Sry if this is somewhat OT.
>>>
>>>      
>>>

-- 
Simon Fristed Eskildsen, M.Sc.EE., Ph.D. Student
Denmark->Aalborg->HST->MI (se at hst.aau.dk || +45 9635 9823)