[MINC-users] about minc data format conversion
Huiguang He
hehuiguang at gmail.com
Thu Jul 6 02:44:23 EDT 2006
Hi, Dear Minc expert:
I have the same question with minc data conversion.
Our aim is try to convert GE format data to mnc file. Since
ge5_to_minc doesn't work. So we use GE->DCM->Analyze->MNC, it seems stupid,
but it does work.
My question is : Is mnc data format big ending or little ending?
Because when I try to use different tools to transfer GE->DCM, some is
big ending, some is little ending. But little ending DCM file can be
converted well, while big ending dcm doesn't.
So, I want to confirm whether MNC data is big ending or little ending.
Does anybody have some other method for transfer GE->MNC?
Thanks very much!
Huiguang
Huiguang He, Ph.D.
Chinese Academy of Sciences
On 7/4/06, minc-users-request at bic.mni.mcgill.ca <
minc-users-request at bic.mni.mcgill.ca> wrote:
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> 1. transformation of GE to MINC (xingfeng lee)
> 2. Re: transformation of GE to MINC (Fucang Jia)
>
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> ----------------------------------------------------------------------
>
> Message: 1
> Date: Mon, 3 Jul 2006 00:42:40 -0700 (PDT)
> From: xingfeng lee <spmlxf at yahoo.com>
> Subject: [MINC-users] transformation of GE to MINC
> To: minc-users at bic.mni.mcgill.ca
> Message-ID: <20060703074240.87156.qmail at web50107.mail.yahoo.com>
> Content-Type: text/plain; charset=iso-8859-1
>
> hello all:
> I encountered a problem when I transformate GE to MINC. we acquired data
> with GE-signa 1.5 Tesla scanner, and wanted ultimate data with MINC
> format. for this sake. we tested 2 ways:
> 1. transformate GE data to DICOM, then to MINC. At the ADW4.0 workstation
> of GE, exported the data of GE format to ADW to finish DICOM transformation.
> but there is a trouble that one folder can only hold 1000 files in GE
> equipment, 3000 files of one run in our experiment were divided into 3
> folders, they can't be accepted by the programme of dcm2mnc(BIC MNI McGill).
> we tried to rename 3000 fiels, and packed them into one folder, the dcm2mnc
> can't read it at all. then we tested second way:
> 2. transformated DICOM to analyze. after renaming and packing 3000 dicom
> files, I finshed analyze transormation using [MRIcro/Import/convert foreign
> to analyze]. then transformated it to MINC, but the next step(Register
> program at BIC.MNI.McGILL) go wrong, 2 images can't be registered.
> But 2 above ways were nuisance because the step from GE to DICOM, so we
> tested 3.
> 3. transformate GE to MINC, after renaming and packing 3000 GE files to
> analyze(*.img&*.hdr) I used program ge5_to_minc at Harvard to finish it. but
> ge5_to_minc can't run at all.
> Appreciate your reply!
> Zhang Zhiqiang
>
> JinLing hospital, medical school of Nanjing University. P.R.China.
>
>
>
> ---------------------------------
> Talk is cheap. Use Yahoo! Messenger to make PC-to-Phone calls. Great
> rates starting at 1?/min.
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> ------------------------------
>
> Message: 2
> Date: Mon, 3 Jul 2006 15:54:29 +0800
> From: "Fucang Jia" <jiafucang at asisz.com>
> Subject: Re: [MINC-users] transformation of GE to MINC
> To: "MINC users mailing list" <minc-users at bic.mni.mcgill.ca>
> Message-ID: <200607031554288284405 at asisz.com>
> Content-Type: text/plain; charset="gb2312"
>
> Hi , Zhiqiang,
>
> If you use AFNI, you can do a try with Ifile and 3dAFNItoMINC
>
> Ifile '083/I.*' '103/I.*' '123/I.*' '143/I.*' ...
>
> 3dAFNItoMINC ...
>
> HTH,
>
> Fucang
>
>
>
>
> On 2006-07-03 15:47:57 xingfeng lee
> Subject: [MINC-users] transformation of GE to MINC
>
> hello all:
>
> I encountered a problem when I transformate GE to MINC. we acquired data with GE-signa
> 1.5
> Tesla scanner, and wanted ultimate data with MINC format. for this sake. we tested 2 ways:
> 1. transformate GE data to DICOM, then to MINC. At the ADW4.0
> workstation of GE, exported the data of GE format to ADW to finish DICOM transformation. but there is a trouble that one folder can only hold 1000 files in GE equipment, 3000 files of one run in our experiment were divided into 3 folders, they can't be accepted by the programme of dcm2mnc(BIC MNI McGill). we tried to rename 3000 fiels, and packed them into one folder, the dcm2mnc can't read it at all. then we tested second way:
>
> 2. transformated DICOM to analyze. after renaming and packing 3000 dicom files, I finshed analyze transormation using [MRIcro/Import/convert foreign to analyze]. then transformated it to MINC, but the next step(Register
> program at BIC.MNI.McGILL) go wrong, 2 images can't be registered.
>
> But 2 above ways were nuisance because the step from GE to DICOM, so we tested 3.
>
> 3. transformate GE to MINC, after renaming and packing 3000 GE files to analyze(*.img&*.hdr) I used program
> ge5_to_minc at Harvard
> to finish it. but ge5_to_minc can't run at all.
> Appreciate your reply!
> Zhang Zhiqiang
>
> JinLing hospital, medical school of Nanjing University. P.R.China.
>
>
>
> ---------------------------------
>
> Talk is cheap. Use Yahoo! Messenger to make PC-to-Phone calls. Great rates starting at 1?min.
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