[MINC-users] Bug in MNI Perl routines

[Andrew Janke]

Hi Kent,

check what "echo $PATH" gives you.  It should include /usr/local/mni/bin

If not add a line like this to your .bashrc (presuming you are using bash)

    export PATH=$PATH:/usr/local/mni/bin


a


On 12/12/06, conover <Kent.Conover at concordia.ca> wrote:
> Hi Andrew,
>
> I thank you for your reply. Here is the text of the error message:
>
> fmr_preprocess_ver_mni.pl: couldn't find program "mincconcat"
> fmr_preprocess_ver_mni.pl: couldn't find program "mincreshape"
> fmr_preprocess_ver_mni.pl: couldn't find program "mincblur"
> fmr_preprocess_ver_mni.pl: couldn't find program "mincresample"
> fmr_preprocess_ver_mni.pl: couldn't find program "autocrop"
> fmr_preprocess_ver_mni.pl: couldn't find program "minctracc"
> fmr_preprocess_ver_mni.pl: couldn't find program "param2xfm"
>
> Usage: fmr_preprocess_ver_mni.pl input.mnc -options
>
> I strongly suspect that I am having path problems. I have tried many
> options, but to no avail.
>
> Regards,
>
> -Kent
>
> On 12-Dec-06, at 12:47 AM, Andrew Janke wrote:
>
> > Hi Kent,
> >
> > First, just checking that you realise that AutoLoader.pm is part of
> > the base perl distribution and has nothing to do with MINC.
> >
> > I suspect that what you are seeing is a problem caused by some missing
> > dependency.  What was the error message that led you to this bit of
> > code?
> >
> > a
> >
> >
> > On 12/7/06, conover <Kent.Conover at concordia.ca> wrote:
> >> Hi Everybody,
> >>
> >> There seems to be a bug in the Perl module "AutoLoader.pm" in that it
> >> fails to recognize my operating system as that of Mac OS X:
> >>
> >> Here is the code segment:
> >>
> >>         if (defined($filename = $INC{"$pkg.pm"})) {
> >>             if ($is_macos) {
> >>                 $pkg =~ tr#/#:#;
> >>                 $filename =~ s#^(.*)$pkg\.pm\z#$1auto:$pkg:
> >> $func.al#s;
> >>             } else {
> >>                 $filename =~ s#^(.*)$pkg\.pm\z#$1auto/$pkg/
> >> $func.al#s;
> >>             }
> >>
> >> Upon evaluating  "if ($is_macos)", this routine jumps to the "else"
> >> condition. I suspect that I need to modify the file separators that
> >> define the $filename string somehow. I would appreciate your
> >> insights.
> >>
> >> Regards,
> >> -Kent
> >
> > --
> > Andrew Janke   (a.janke at gmail.com || http://a.janke.googlepages.com/)
> > Canada->Montreal                                   Cell: +1 (514)
> > 924 2012
> > _______________________________________________
> > MINC-users at bic.mni.mcgill.ca
> > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> >
>
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>


-- 
Andrew Janke   (a.janke at gmail.com || http://a.janke.googlepages.com/)
Canada->Montreal                                   Cell: +1 (514) 924 2012