[MINC-users] Once again: how to use insect properly?

[Jason Lerch]

Ed Gronenschild wrote:

>Hi,
>
>I posted this a week ago and until now I didn't get an answer.
>So once more:
>
>I've used insect to do the classification into WM, GM and CSF. I  
>noticed, however,
>that the background gets the same class label (=1) as CSF, so I'm not  
>able
>to distinguish CSF from the background. (WM gets label 3 and GM label  
>2).
>
>The command was insect input_volume.mnc, where the volume was a T1  
>coronal stack.
>
>  
>
Can you try using classify_clean -clean_tags on its own on a file in 
stereotaxic space? And, should that not work, can you provide a listing 
of your (prefix)/share/classify directory, where prefix is the package 
installation location?

Cheers,

Jason

>Have I done something wrong?
>
>The version of insect is from the classify-1.0 package and I' m on a  
>Mac OSX 10.3.9.
>
>Ed
>
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>  
>