[MINC-users] MINC-users Digest, Vol 4, Issue 10

[Andrew Janke]

> Now, I can still not run mritotal due to make_model. I was not able to build the model during make install process in mni_autoreg_model-1.03 directory.

What was the error in the install process?  Looks to me (from the
below) that the install didn't complete and only files were copied.  i
suspect again this is because make_model (part of the mni_autoreg
install) was not on your path when you installed the model files
package.

> If I run ./mritotal in.mnc out.xfm I would get the following error:
>
> Loading configuration file /usr/local/mni/bin/../etc/mni_autoreg/mritotal.cfg
> Loading protocol default (protocol file = /usr/local/mni/bin/../etc/mni_autoreg/mritotal.default.cfg)
> /usr/local/mni/bin/../share/mni_autoreg/average_305_16_blur.mnc does not exist
> /usr/local/mni/bin/../share/mni_autoreg/average_305_8_blur.mnc does not exist
> /usr/local/mni/bin/../share/mni_autoreg/average_305_8_dxyz.mnc does not exist
> /usr/local/mni/bin/../share/mni_autoreg/average_305_16_mask.mnc does not exist
> /usr/local/mni/bin/../share/mni_autoreg/average_305_8_mask.mnc does not exist
>
> In /usr/local/mni/share/mni_autoreg there are only 3 files:
> average_305_headmask.mnc
> average_305_mask.mnc
> average_305.mnc.

So, now that you have fixed your path you can either re-install the
model files or do this:

   cd /usr/loca/mni/share/mni_autoreg
   make_model average_305

--
Andrew Janke      (a.janke at gmail.com || www.cmr.uq.edu.au/~rotor)
Canada->Montreal                                   Cell: +1 (514) 924 2012