[MINC-users] emma for matlab 6.5/7?

[Marc Schoenwiesner]

Hi,

thanks, I have gotten a bit closer. mireadimages() does a good job, but the real
trouble seems to come from mincextract. If I run mincextract on a slice of any
of my volumes or icbm_avg_152_t1_tal_lin.mnc I get an almost random array in
return with most of the voxel values at something like -8.5960e+247...
If I clamp the output at the correct range I can see a distorted outline of the
brain. Any idea what could be causing this?

Cheers,
Marc


Quoting Robert VINCENT <bert at bic.mni.mcgill.ca>:

> Hi Marc,
>
> I'm not sure if this will help, but please take a look at emma 0.9.8,
> which attempts to correct some possible issues with earlier versions of
> emma on Windows.
>
> You can download it here:
>
> http://www.bic.mni.mcgill.ca/~bert/emma-0.9.8-win32.zip
>
> Copy all of the DLL and EXE files into a directory on your path, and copy
> all of the .m files into the normal location you use for emma toolbox
> files. If you add the emma toolbox to the Matlab path you should be all
> set. I am able to use mireadimages() with this version of emma and
> Matlab7.
>
> 	-bert
>
> On Sat, 12 Nov 2005, Marc Schoenwiesner wrote:
>
> > Hi,
> >
> > I installed emma 0.9.7 on several winXP systems under matlab 6.5 and I
> always
> > get the following error message:
> > > ??? Error using ==> mireadimages
> > > Unable to read images from file e:\ave3Dtal.mnc
> > Under matlab 6.1 on the same computer this works without problem. Has
> anyone had
> > similar problems and an idea how to solve this?
> >
> > Cheers,
> > Marc
> >
> >
> > Quoting Robert VINCENT <bert at bic.mni.mcgill.ca>:
> >
> > > Hi Marc,
> > >
> > > EMMA 0.9.7 (and later) should work fine with Matlab 6.5. There are some
> > > issues on systems with spaces in filenames, and there are some
> > > installation and configuration problems that I have seen on Windows, but
> > > otherwise it should work.
> > >
> > > 	-bert
> > >
> > > On Fri, 11 Nov 2005, Marc Schoenwiesner wrote:
> > >
> > > > Hi,
> > > >
> > > > is there any chance to get mireadimages to work with matlab 6.5? Most
> of
> > > the
> > > > programs seem to work fine (miinquire for instance gives the correct
> image
> > > > size). It's getting hard to find a matlab 6.1 or older installation.
> > > >
> > > > Cheers,
> > > > Marc
> > > > _______________________________________________
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> > > >
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