[MINC-users] icbm probabilistic atlas

[Daniel Schwarz]

Thank you Andrew, I'll try it.

I have downloaded the tissue probabilistic atlas (after short 
registration) here: 
http://www.loni.ucla.edu/Atlases/Atlas_Detail.jsp?atlas_id=7

Daniel Schwarz


Andrew Janke napsal(a):

>On 06/06/05, Daniel Schwarz <schwarzd@feec.vutbr.cz> wrote:
>  
>
>>I need to get
>>
>>icbm452_atlas_probability_white.hdr,
>>icbm452_atlas_probability_gray.hdr and
>>icbm452_atlas_probability_csf.hdr
>>
>>aligned with
>>
>>icbm_avg_152_t1_tal_lin.mnc
>>
>>I used ana2mnc to get the atlases into mnc format. Is there a simple way
>>how to crop/pad the images to get them aligned with icbm_avg_152....?
>>    
>>
>
>Daniel, 
>
>I am unfamiliar with this atlas, but:
>
>presuming the icbm452 images are indeed aligned in ICBM space (I
>suspect that they are) and presuming they orginate from SPM somewhere.
> Then you are best of to convert using spm2mnc or nii2mnc.  ana2mnc
>ignores a few of things that SPM does with the ANALYZE header.
>
>nii2mnc is a new converter written by Bert Vincent for NifTi-1 data
>that is now included in minc 1.4.
>
>If this all fails then you are going to have to perform a registration
>between the models using  mritotal/mritoself.
>
>Can you provide a copy of this model or a source to download it?
>
>
>
>  
>