[MINC-users] n3 1.10 error os x
Mark Pinsk
minc-users@bic.mni.mcgill.ca
Tue Jul 12 17:38:03 2005
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Thanks everyone for the prompt response.
I'm using the latest Freesurfer OSX distribution which includes
select MNI tools in its installation, but it seemed to be missing
both the mni_perllib and getopt-tabular which were needed for N3 to run.
all is good now,
mark
On Jul 12, 2005, at 8:41 AM, Jason Lerch wrote:
> If you installed the .dmg package then the perl libraries have been
> installed - you just need to set one environment variable:
>
> setenv PERL5LIB /usr/local/mni/lib/Library/Perl/5.8.1
>
> (See /usr/local/mni/ReadMe.rtf).
>
> Jason
>
> On Jul 12, 2005, at 8:33 AM, Robert VINCENT wrote:
>
>
>> Hi Mark,
>>
>> You probably did not install the MNI perl libraries, which are
>> required by
>> N3.
>>
>> You can get them here:
>>
>> http://packages.bic.mni.mcgill.ca/tgz/mni_perllib-0.07.tar.gz
>>
>> Hope this solves the problem,
>>
>> -bert
>>
>> On Sun, 10 Jul 2005, Mark Pinsk wrote:
>>
>>
>>> Hi,
>>> I just installed the latest minc-1.4 and n3-1.10 packages for os x
>>> onto my ibook running Tiger (OS X 10.4). I set my path to include
>>> /usr/local/mni/bin.
>>>
>>> All of the minc tools seem to working, but I get this error message
>>> when I type 'nu_correct':
>>>
>>> Can't locate MNI/Startup.pm in @INC (@INC contains: /sw/lib/perl5
>>> /sw/lib/perl5/darwin
>>> /System/Library/Perl/5.8.6/darwin-thread-multi-2level
>>> /System/Library/Perl/5.8.6
>>> /Library/Perl/5.8.6/darwin-thread-multi-2level /Library/Perl/5.8.6
>>> /Library/Perl /Network/Library/Perl/5.8.6/darwin-thread-multi-2level
>>> /Network/Library/Perl/5.8.6 /Network/Library/Perl
>>> /System/Library/Perl/Extras/5.8.6/darwin-thread-multi-2level
>>> /System/Library/Perl/Extras/5.8.6 /Library/Perl/5.8.1 .) at
>>> /usr/local/mni/bin/nu_correct line 37.
>>> BEGIN failed--compilation aborted at /usr/local/mni/bin/
>>> nu_correct line 37.
>>>
>>> Any idea what's wrong?
>>> Thanks
>>> Mark
>>>
>>> _______________________________________________
>>> MINC-users@bic.mni.mcgill.ca
>>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>>
>>>
>>
>> _______________________________________________
>> MINC-users@bic.mni.mcgill.ca
>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>
>
>
>
Mark A. Pinsk, Ph.D.
Green 3-C-5, Dept. of Psychology
Princeton U., Princeton NJ 08544
(609) 258-8318
mpinsk@princeton.edu
www.princeton.edu/~mpinsk/
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<HTML><BODY style=3D"word-wrap: break-word; -khtml-nbsp-mode: space; =
-khtml-line-break: after-white-space; "><DIV>Thanks everyone for the =
prompt response.</DIV><DIV><BR =
class=3D"khtml-block-placeholder"></DIV><DIV style=3D"margin-top: 0px; =
margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">I'm using the =
latest Freesurfer OSX distribution which includes select MNI tools in =
its installation, but it seemed to be missing</DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; ">both the mni_perllib and getopt-tabular which were =
needed for N3 to run.</DIV><DIV style=3D"margin-top: 0px; margin-right: =
0px; margin-bottom: 0px; margin-left: 0px; font: normal normal normal =
12px/normal Helvetica; min-height: 14px; "><BR></DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; ">all is good now,</DIV><DIV style=3D"margin-top: 0px; =
margin-right: 0px; margin-bottom: 0px; margin-left: 0px; =
">mark</DIV><DIV><BR =
class=3D"khtml-block-placeholder"></DIV><BR><DIV><DIV>On Jul 12, 2005, =
at 8:41 AM, Jason Lerch wrote:</DIV><BR =
class=3D"Apple-interchange-newline"><BLOCKQUOTE type=3D"cite"><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; ">If you installed the .dmg package then the perl =
libraries have been installed - you just need to set one environment =
variable:</DIV><DIV style=3D"margin-top: 0px; margin-right: 0px; =
margin-bottom: 0px; margin-left: 0px; min-height: 14px; "><BR></DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; ">setenv PERL5LIB =
/usr/local/mni/lib/Library/Perl/5.8.1</DIV><DIV style=3D"margin-top: =
0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; =
min-height: 14px; "><BR></DIV><DIV style=3D"margin-top: 0px; =
margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">(See =
/usr/local/mni/ReadMe.rtf).</DIV><DIV style=3D"margin-top: 0px; =
margin-right: 0px; margin-bottom: 0px; margin-left: 0px; min-height: =
14px; "><BR></DIV><DIV style=3D"margin-top: 0px; margin-right: 0px; =
margin-bottom: 0px; margin-left: 0px; ">Jason</DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; min-height: 14px; "><BR></DIV><DIV style=3D"margin-top: =
0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">On Jul =
12, 2005, at 8:33 AM, Robert VINCENT wrote:</DIV><DIV style=3D"margin-top:=
0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; =
min-height: 14px; "><BR></DIV> <BR><BLOCKQUOTE type=3D"cite"><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; ">Hi Mark,</DIV><DIV style=3D"margin-top: 0px; =
margin-right: 0px; margin-bottom: 0px; margin-left: 0px; min-height: =
14px; "><BR></DIV><DIV style=3D"margin-top: 0px; margin-right: 0px; =
margin-bottom: 0px; margin-left: 0px; ">You probably did not install the =
MNI perl libraries, which are required by</DIV><DIV style=3D"margin-top: =
0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; =
">N3.</DIV><DIV style=3D"margin-top: 0px; margin-right: 0px; =
margin-bottom: 0px; margin-left: 0px; min-height: 14px; "><BR></DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; ">You can get them here:</DIV><DIV style=3D"margin-top: =
0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; =
min-height: 14px; "><BR></DIV><DIV style=3D"margin-top: 0px; =
margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><A =
href=3D"http://packages.bic.mni.mcgill.ca/tgz/mni_perllib-0.07.tar.gz">htt=
p://packages.bic.mni.mcgill.ca/tgz/mni_perllib-0.07.tar.gz</A></DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; min-height: 14px; "><BR></DIV><DIV style=3D"margin-top: =
0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">Hope =
this solves the problem,</DIV><DIV style=3D"margin-top: 0px; =
margin-right: 0px; margin-bottom: 0px; margin-left: 0px; min-height: =
14px; "><BR></DIV><DIV style=3D"margin-top: 0px; margin-right: 0px; =
margin-bottom: 0px; margin-left: 0px; "><SPAN =
class=3D"Apple-converted-space"><SPAN class=3D"Apple-converted-tab">=A0 =
=A0 </SPAN></SPAN>-bert</DIV><DIV style=3D"margin-top: 0px; =
margin-right: 0px; margin-bottom: 0px; margin-left: 0px; min-height: =
14px; "><BR></DIV><DIV style=3D"margin-top: 0px; margin-right: 0px; =
margin-bottom: 0px; margin-left: 0px; ">On Sun, 10 Jul 2005, Mark Pinsk =
wrote:</DIV><DIV style=3D"margin-top: 0px; margin-right: 0px; =
margin-bottom: 0px; margin-left: 0px; min-height: 14px; "><BR></DIV> =
<BR><BLOCKQUOTE type=3D"cite"><DIV style=3D"margin-top: 0px; =
margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">Hi,</DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; ">I just installed the latest minc-1.4 and n3-1.10 =
packages for os x</DIV><DIV style=3D"margin-top: 0px; margin-right: 0px; =
margin-bottom: 0px; margin-left: 0px; ">onto my ibook running Tiger (OS =
X 10.4).<SPAN class=3D"Apple-converted-space">=A0 </SPAN>I set my path =
to include</DIV><DIV style=3D"margin-top: 0px; margin-right: 0px; =
margin-bottom: 0px; margin-left: 0px; ">/usr/local/mni/bin.</DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; min-height: 14px; "><BR></DIV><DIV style=3D"margin-top: =
0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">All of =
the minc tools seem to working, but I get this error message</DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; ">when I type 'nu_correct':</DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; min-height: 14px; "><BR></DIV><DIV style=3D"margin-top: =
0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">Can't =
locate MNI/Startup.pm in @INC (@INC contains: /sw/lib/perl5</DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; ">/sw/lib/perl5/darwin</DIV><DIV style=3D"margin-top: =
0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; =
">/System/Library/Perl/5.8.6/darwin-thread-multi-2level</DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; ">/System/Library/Perl/5.8.6</DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; ">/Library/Perl/5.8.6/darwin-thread-multi-2level =
/Library/Perl/5.8.6</DIV><DIV style=3D"margin-top: 0px; margin-right: =
0px; margin-bottom: 0px; margin-left: 0px; ">/Library/Perl =
/Network/Library/Perl/5.8.6/darwin-thread-multi-2level</DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; ">/Network/Library/Perl/5.8.6 =
/Network/Library/Perl</DIV><DIV style=3D"margin-top: 0px; margin-right: =
0px; margin-bottom: 0px; margin-left: 0px; =
">/System/Library/Perl/Extras/5.8.6/darwin-thread-multi-2level</DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; ">/System/Library/Perl/Extras/5.8.6 =
/Library/Perl/5.8.1 .) at</DIV><DIV style=3D"margin-top: 0px; =
margin-right: 0px; margin-bottom: 0px; margin-left: 0px; =
">/usr/local/mni/bin/nu_correct line 37.</DIV><DIV style=3D"margin-top: =
0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">BEGIN =
failed--compilation aborted at /usr/local/mni/bin/nu_correct line =
37.</DIV><DIV style=3D"margin-top: 0px; margin-right: 0px; =
margin-bottom: 0px; margin-left: 0px; min-height: 14px; "><BR></DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; ">Any idea what's wrong?</DIV><DIV style=3D"margin-top: =
0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; =
">Thanks</DIV><DIV style=3D"margin-top: 0px; margin-right: 0px; =
margin-bottom: 0px; margin-left: 0px; ">Mark</DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; min-height: 14px; "><BR></DIV><DIV style=3D"margin-top: =
0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; =
">_______________________________________________</DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; "><A =
href=3D"mailto:MINC-users@bic.mni.mcgill.ca">MINC-users@bic.mni.mcgill.ca<=
/A></DIV><DIV style=3D"margin-top: 0px; margin-right: 0px; =
margin-bottom: 0px; margin-left: 0px; "><A =
href=3D"http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users">http://w=
ww.bic.mni.mcgill.ca/mailman/listinfo/minc-users</A></DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; min-height: 14px; "><BR></DIV> <BR></BLOCKQUOTE><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; min-height: 14px; "><BR></DIV><DIV style=3D"margin-top: =
0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; =
">_______________________________________________</DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; "><A =
href=3D"mailto:MINC-users@bic.mni.mcgill.ca">MINC-users@bic.mni.mcgill.ca<=
/A></DIV><DIV style=3D"margin-top: 0px; margin-right: 0px; =
margin-bottom: 0px; margin-left: 0px; "><A =
href=3D"http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users">http://w=
ww.bic.mni.mcgill.ca/mailman/listinfo/minc-users</A></DIV> =
<BR></BLOCKQUOTE><DIV style=3D"margin-top: 0px; margin-right: 0px; =
margin-bottom: 0px; margin-left: 0px; min-height: 14px; "><BR></DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; min-height: 14px; "><BR></DIV> <BR =
class=3D"Apple-interchange-newline"></BLOCKQUOTE></DIV><BR><DIV> =
<DIV><DIV>Mark A. Pinsk, Ph.D.</DIV><DIV>Green 3-C-5, Dept. of =
Psychology</DIV><DIV>Princeton U., Princeton NJ 08544</DIV><DIV>(609) =
258-8318</DIV><DIV><A =
href=3D"mailto:mpinsk@princeton.edu">mpinsk@princeton.edu</A><BR></DIV><DI=
V><A =
href=3D"http://www.princeton.edu/~mpinsk/">www.princeton.edu/~mpinsk/</A><=
/DIV><DIV><BR class=3D"khtml-block-placeholder"></DIV></DIV> =
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