[MINC-users] Resampling 2mm MRI to 1MM

Jason Lerch jason@bic.mni.mcgill.ca
Tue Sep 14 11:55:05 2004


This should work:

autocrop -isostep 1 input_2mm.mnc output_1mm.mnc

Though your mincresample call provides the same functionality - except 
that, in your case, you would overwrite the highres_session1_mri.mnc 
file (well, actually, it would complain that the output file already 
exists), which is probably not what you want.

Cheers,

Jason

On Sep 14, 2004, at 11:29 AM, Dylan WAGNER wrote:

> Hi Minc-users,
>
>        I expect this is child's play for most but I can't seem to find 
> any
> details in the archives on how we resample our 7 minute anatomicals
> to match the 15 minute globals.
>
>       I already have high-res mris for my subjects, now I want to 
> boost up
> the low-res mris I took in another session.
>
>       I'm thinking something along the lines of:
>
> mincresample -like highres_session1_mri.mnc lowres_session2_mri.mnc
> highres_session1_mri.mnc
>
>       Seems too simple somehow but the result looks alright.
>
>       Also once the lowres mri is resampled can we then treat it as we
> would any other mri? Ie: use it to generate an xfm for transforming the
> fmri volumes to tal?
>
>                      Thanks,
>
>
>
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