[MINC-development] linking errors on os x

[Vicka Corey]

yes, please, would y'all do that?  i added it to our local copy of the source
last time, but obviously this isn't the most sustainable option....

thanks,
--vicka

On Tue, Feb 17, 2004 at 02:19:41PM -0500, Jason Lerch wrote:
> >
> > is the current os x version being built with -fno-common?  if not can 
> > it be?
> 
> No, it is not currently being built with -fno-common, and yes, it 
> certainly can be built with that option (assuming that nothing else 
> breaks as a result, of course, though I see no reason why that should 
> happen).
> 
> Ah, I can barely await the joys of rebuilding the os x minc distro yet 
> again ;-)
> 
> Jason
> 
> >
> > thanks
> > --vicka
> >
> > On Wed, Feb 11, 2004 at 01:37:41PM -0500, Kevin Teich wrote:
> >>> The only thing which jumps out at me - though it might not make a
> >>> difference - is the order that you link the libraries. -lnetcdf 
> >>> should
> >>> come after -lminc. Again, don't know if this will make a difference 
> >>> ...
> >>
> >> should this be added to flags for compilation of libminc and 
> >> libnetcdf, or
> >> for the linking of the dynamic library that uses them? i tried the 
> >> latter
> >> and it doesn't help.
> >>
> >> (i'm only emailing you on this because i have no idea if minc or 
> >> netcdf is
> >> distributed as source, so maybe this is a really stupid question.)
> >>
> >>
> >>>
> >>> Jason
> >>>
> >>> On Feb 6, 2004, at 6:00 PM, Vicka Corey wrote:
> >>>
> >>>> hmm.  ok, i downloaded the new dist, and added flat_namespace to my
> >>>> flags.
> >>>> but that doesn't seem to be it:
> >>>>
> >>>> gcc -I/Users/nmrroot/dev/include -I/usr/pubsw/include
> >>>> -I/Users/nmrroot/dev/include -I/usr/pubsw/include -g -DDEBUG 
> >>>> -DDarwin
> >>>> -flat_namespace -DDECLARE_PROGNAME -c -o fsgdf.o fsgdf.c
> >>>> gcc -dynamiclib fsgdf.o fsgdf_wrap.o -L/Users/nmrroot/dev/lib/Darwin
> >>>> -L/usr/pubsw/lib -lm -lutils -lunix -lhipsstubs -limage -lutils 
> >>>> -lrgb
> >>>> -ltiff -ljpeg -lz -ldicom -lvolume_io -lnetcdf -lminc -ltk8.3 
> >>>> -ltcl8.3
> >>>> -lBLT -o libtclfsgdf.dylib
> >>>> ld: warning prebinding disabled because dependent library:
> >>>> /sw/lib/libtiff.3.dylib is not prebound
> >>>> ld: common symbols not allowed with MH_DYLIB output format with the
> >>>> -multi_module option
> >>>> /usr/pubsw/lib/libminc.a(minc_globdef.o) definition of common
> >>>> _minc_call_depth (size 4)
> >>>> /usr/pubsw/lib/libminc.a(minc_globdef.o) definition of common
> >>>> _minc_trash_var (size 4)
> >>>> /usr/pubsw/lib/libnetcdf.a(v2i.o) definition of common
> >>>> _cdf_routine_name (size 4)
> >>>> /usr/pubsw/lib/libminc.a(minc_globdef.o) definition of common
> >>>> _minc_callers_ncopts (size 4)
> >>>> /usr/bin/libtool: internal link edit command failed
> >>>> make: *** [tcl] Error 1
> >>>>
> >>>> ...any ideas?
> >>>>
> >>>> thanks,
> >>>> --vicka
> >>>>
> >>>> On Sun, Jan 18, 2004 at 10:51:36AM -0500, Jason Lerch wrote:
> >>>>>
> >>>>> On Jan 16, 2004, at 2:23 PM, Vicka Corey wrote:
> >>>>>
> >>>>>> hi -- i've been trying to build freesurfer on an osx 10.3 laptop. 
> >>>>>>  i
> >>>>>> am using
> >>>>>> the minc 1.2 cd from the workshop, and am running into some 
> >>>>>> errors:
> >>>>>>
> >>>>>> building libfsgdf stuff
> >>>>>> /usr/bin/libtool: internal link edit command failed
> >>>>>> ld: warning prebinding disabled because dependent library:
> >>>>>> /sw/lib/libtiff.3.dylib is not prebound
> >>>>>> ld: common symbols not allowed with MH_DYLIB output format with 
> >>>>>> the
> >>>>>> -multi_module option
> >>>>>> /usr/pubsw/lib/libminc.a(minc_globdef.o) definition of common
> >>>>>> _minc_call_depth (size 4)
> >>>>>> /usr/pubsw/lib/libminc.a(minc_globdef.o) definition of common
> >>>>>> _minc_trash_var (size 4)
> >>>>>> /usr/pubsw/lib/libnetcdf.a(v2i.o) definition of common
> >>>>>> _cdf_routine_name (size 4)
> >>>>>> /usr/pubsw/lib/libminc.a(minc_globdef.o) definition of common
> >>>>>> _minc_callers_ncopts (size 4)
> >>>>>> gmake[2]: *** [tcl] Error 1
> >>>>>>
> >>>>>>
> >>>>>> any ideas?
> >>>>>
> >>>>> Might be the OSX namespace issue. Try
> >>>>> setenv CC 'gcc -flat_namespace'
> >>>>> (or the same for CXX if you are using c++).
> >>>>>
> >>>>> No idea if this is your problem, but it is worh a try.
> >>>>>
> >>>>>>  also, any sign of the bugfixes from awhile back...?
> >>>>>>
> >>>>> Working on it as I write this.
> >>>>>
> >>>>> Jason
> >>>>>
> >>>>> _______________________________________________
> >>>>> MINC-development mailing list
> >>>>> MINC-development@bic.mni.mcgill.ca
> >>>>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-development
> >>>> _______________________________________________
> >>>> MINC-development mailing list
> >>>> MINC-development@bic.mni.mcgill.ca
> >>>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-development
> >>>
> >>
> >> -- 
> >> Kevin Teich
> >>
> >>
> >>
> > _______________________________________________
> > MINC-development mailing list
> > MINC-development@bic.mni.mcgill.ca
> > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-development
> 
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