[MINC-development] nonlinear .xfm for t1

[Kristi Drudik]

Hello!

Please excuse my ignorance. I would like to generate a non-linear .xfm file for my subjects' native T1 using the icbm152_nlin_asym_09c. Would the following command suffice or am I missing options? Not sure what values I'd need to put for options like:
-weight
-stiffness
-similarity
-sub_lattice....etc...

minctracc ${subjDir}/T1.mnc ${mni_template} ${subjDir}/nonlin.xfm -nonlinear -est_translation -est_center -clobber

Thank you very much for clarifying.

Best,
Kristi
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