[MINC-development] dcm2mnc issues
Vladimir S. FONOV
vladimir.fonov at gmail.com
Fri Jun 11 15:52:59 EDT 2021
Hello Cecile,
I will talk to my people, ask them how motivated they are to fix this
issue.
On Fri, Jun 11, 2021 at 2:58 PM Cecile Madjar <cecile.madjar at mcin.ca> wrote:
> Hello MINC developers,
>
> I just wanted to follow up on this issue. Is there a plan to fix the
> issues I reported with dcm2mnc in the near future?
>
> Link to the issues:
> https://github.com/BIC-MNI/minc-tools/issues/created_by/cmadjar
>
> As Vlad pointed out (thank you for testing Vlad!!(, the issues do not seem
> to be resolved. See https://github.com/BIC-MNI/minc-tools/pull/113
> If we could have some updates on the plan moving forward, that would be
> greatly appreciated.
>
> Crossing my fingers that those issues could be resolved.
> Keep me posted. Thank you!
>
> Cécile
>
> On Wed, May 19, 2021 at 12:08 AM Vladimir S. FONOV <
> vladimir.fonov at gmail.com> wrote:
>
>> Unfortunately, proposed changes do not seem to address the problem.
>> See https://github.com/BIC-MNI/minc-tools/pull/113
>>
>> On Fri, May 7, 2021 at 1:35 PM Cecile Madjar <cecile.madjar at mcin.ca>
>> wrote:
>>
>>> Hi Vlad,
>>>
>>> Definitely, I will copy sample datasets and let you know where they are
>>> once copied. Thank you!!
>>>
>>> Cécile
>>>
>>> > On May 7, 2021, at 10:36 AM, Vladimir S. Fonov <
>>> vladimir.fonov at gmail.com> wrote:
>>> >
>>> > Hello,
>>> >
>>> >
>>> > so the proposed change to the minc-tools is on github (
>>> https://github.com/BIC-MNI/minc-tools/pull/113 ), but there is no DICOM
>>> files to actually test that it works.
>>> >
>>> > So, as an interested party, perhaps Cecile Madjar can supply a set of
>>> DICOMs that can be used for testing?
>>> >
>>> >
>>> > On 2021-04-30 10:02 a.m., Cecile Madjar wrote:
>>> >> Hi JP,
>>> >> This is great news! Thank you. Let me know once it is part of the
>>> MINC tools.
>>> >> Is there a way to obtain the dcm2mnc binaries for Ubuntu and CentOS
>>> at the same time by any chance?
>>> >> Thank you again,
>>> >> Cécile
>>> >> On Thu, Apr 29, 2021 at 1:05 PM Jean-Philippe Coutu <
>>> jp at biospective.com <mailto:jp at biospective.com>> wrote:
>>> >> Hi Cecile,
>>> >> We have been modifying dcm2mnc actively internally over the past
>>> >> four years without having the bandwidth to generate pull requests
>>> to
>>> >> the minctools github repository. I am preparing a (sizeable) pull
>>> >> request to the minctools github repository that includes all of our
>>> >> changes, which I believe from my experience is likely to fix at
>>> >> least two of the three issues you have opened.
>>> >> Best,
>>> >> JP
>>> >> From: *Cecile Madjar* <cecile.madjar at mcin.ca
>>> >> <mailto:cecile.madjar at mcin.ca>>
>>> >> Date: Fri, Apr 23, 2021 at 5:22 PM
>>> >> Subject: [MINC-development] dcm2mnc issues
>>> >> To: MINC development discussion & planning
>>> >> <minc-development at bic.mni.mcgill.ca
>>> >> <mailto:minc-development at bic.mni.mcgill.ca>>,
>>> >> <minc-users at bic.mni.mcgill.ca <mailto:
>>> minc-users at bic.mni.mcgill.ca>>
>>> >> Hello,
>>> >> A while back, we logged several critical dcm2mnc issues on
>>> >> GitHub. We are still experiencing those issues in several of
>>> our
>>> >> LORIS projects. I wanted to follow up with the MINC community
>>> >> regarding those issues to see if dcm2mnc is still supported and
>>> >> if there will be any developments regarding those issues.
>>> >> Here is the list of logged issues:
>>> >>
>>> https://github.com/BIC-MNI/minc-tools/issues/created_by/cmadjar
>>> >> <
>>> https://github.com/BIC-MNI/minc-tools/issues/created_by/cmadjar>
>>> >> As the imaging world progresses, we are encountering those
>>> >> problematic issues in more of our LORIS projects and we need to
>>> >> provide our users solutions regarding these issues. If there is
>>> >> no possibility to fix dcm2mnc, then we may have to consider
>>> >> moving away from MINC, which we would prefer avoiding for
>>> >> obvious reasons.
>>> >> Please, let us know your thoughts on this. Help regarding these
>>> >> issues would be greatly appreciated.
>>> >> Best regards,
>>> >> Cécile
>>> >> _______________________________________________
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>>> >>
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>>
>>
>> --
>> Best regards,
>>
>> Vladimir S. Fonov ~ vladimir <dot> fonov <at> gmail <dot> com
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>>
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--
Best regards,
Vladimir S. Fonov ~ vladimir <dot> fonov <at> gmail <dot> com
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