[Loris-dev] VISIT LABEL
Christine Rogers
rogers at bic.mni.mcgill.ca
Thu May 11 13:02:02 EDT 2023
Hi Maria,
Thanks for your comment --
I'm forwarding your question to the loris-dev mailing list for the benefit
of the community.
Thanks --
Christine
On Wed, May 10, 2023 at 8:57 AM Olano.María <molano at ext.cnio.es> wrote:
> Hello Camille!
>
>
>
> I did exactly that and it works like a charm, thank you for your advice. I
> would suggest maybe updating the LORIS config doc as there have been many
> steps that have not been reflected on it, and some MYSQL tables have
> changed names (such as *project_subproject_rel *) but nevertheless, thank
> you.
>
>
>
> María
>
>
>
> *From:* Olano.María
> *Sent:* 10 May 2023 13:24
> *Subject:* RE: [Loris-dev] VISIT LABEL
>
>
>
> Hello Camille!
>
>
>
> That was my line of thought too, the MySQL *project_subproject_rel* is
> correctly filled out, but the *visit_project_subproject_rel* needs a
> “VisitID” that is present in the *visit* MySQL table which isn’t filled
> out as I didn’t see any indication of having to fill that table out in the
> setting LORIS instructions. The visit table asks for a VisitName and
> VisitLabel which I am not quite sure how to fill out, as I would just
> simply put the same answer for both of these variables. (AKA
> ClinicalPancreas)
>
>
>
> If that is indeed what I am supposed to do, I’ll be happy to do so.
>
>
>
> Thank you in advance
>
>
>
> María
>
>
>
> *Sent:* 09 May 2023 21:30
> *Subject:* Re: [Loris-dev] VISIT LABEL
>
> Hello María,
>
>
> Do you have the correct visit / project / subproject relationships
> inserted into the *project_subproject_rel* and
> *visit_project_subproject_rel* tables? I believe this is what is causing
> the error.
>
> Best,
>
> *Camille Beaudoin* (she/her/elle)
>
> CCNA Software Developer
> Montreal Neurological Institute
> McGill University
>
> camille.beaudoin at mcin.ca
>
>
>
> On Tue, May 9, 2023 at 11:28 AM Christine Rogers <rogers at bic.mni.mcgill.ca>
> wrote:
>
> Here's the email with screenshots from Maria Olana --
>
>
>
> Thanks for nominating someone to answer :)
>
> ---------- Forwarded message ---------
> From: *Olano.María* <molano at ext.cnio.es>
> Date: Mon, May 8, 2023 at 6:44 AM
> Subject: [Loris-dev] VISIT LABEL
> To: loris-dev at bic.mni.mcgill.ca <loris-dev at bic.mni.mcgill.ca>
>
>
>
> Good morning!
>
>
>
> Our team is in the process of implementing visits to our subproject ID =3
> and we would like the visits to be predetermined sentences instead of VX.
> We changed the config.xml file as so:
>
>
>
> <visitLabel subprojectID="3">
>
> <!-- generation can have either 'user' or 'sequence' to denote
> user entered or a pre-defined sequence -->
>
> <generation>sequence</generation>
>
> <regex>/^[A-Z0-9]{20}$/i</regex>
>
> <length>20</length>
>
> <suggest>%value%</suggest> <!-- %value% will be substituted
> for the next unique number -->
>
> <labelSet>
>
> <item value="ClinicalPancreas">Clinical Information from
> PDAC patients</item>
>
> <item value="ImagingPancreas">Pathological images from
> PDAC patients</item>
>
> </labelSet>
>
> </visitLabel>
>
>
>
> And the Visit_Window table in MySQL has been properly filled out as
> follows.
>
>
>
>
>
> However, when trying to create a timepoint for a patient in this
> subproject, an error pops up:
>
> These are obviously both linked as we have been able to create a patient
> in both CASADP project and Pancreas subproject. We suspect the problem
> falls on our edited config.xml.
>
>
>
> If you could help us shed some light on this problem, we would be more
> than thankful.
>
>
>
> María
>
>
>
>
>
>
>
>
>
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>
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> _______________________________________________
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>
>
> --
>
> Research Project Officer
> christine.rogers at mcgill.ca
> McGill Centre for Integrative Neuroscience | MCIN.ca
>
> Montreal Neurological Institute-Hospital
>
> McGill University | Montreal | Canada
>
>
>
> **ADVERTENCIA LEGAL**: Este correo electrónico, y en su caso los ficheros
> adjuntos, pueden contener información protegida para el uso exclusivo de su
> destinatario. Se prohíbe la distribución, reproducción o cualquier otro
> tipo de transmisión por parte de otra persona que no sea el destinatario.
> Si usted recibe por error este correo, se ruega comunicarlo al remitente y
> borrar el mensaje recibido.
> De conformidad con lo dispuesto en el Reglamento (UE) 2016/679 relativo a
> la protección de los datos personales de las personas físicas, la
> información personal que nos pueda facilitar a través de este correo
> electrónico quedará registrada por la Fundación CNIO con la finalidad de
> tramitar el objeto del presente correo electrónico. El tratamiento de sus
> datos personales se encuentra legitimado por ser necesario para gestionar
> el objeto del presente mensaje. Estos datos personales no serán comunicados
> a ningún destinatario salvo a aquellos que usted nos autorice o así venga
> exigido por una ley. Ud. podrá ejercer los derechos de acceso,
> rectificación, supresión, limitación de tratamiento, portabilidad y
> oposición en la siguiente dirección: c/Melchor Fernandez Almagro 3, 28029
> (Madrid). Podrá ponerse en contacto con el Delegado de Protección de Datos
> en: delegado_lopd at cnio.es. Para el caso de que Ud. precise conocer
> información adicional sobre el tratamiento de sus datos personales, puede
> consultar dicha información adicional en el siguiente enlace dentro de
> nuestra página web: https://www.cnio.es/es/privacidad/index.asp
>
> **LEGAL NOTICE**: This email and any attached files may contain protected
> information for the sole use of its intended recipient or addressee. Anyone
> other than the intended recipient or addressee is strictly prohibited from
> distributing, reproducing or transmitting the email and its contents in any
> way. If you receive this email in error, please notify the sender and
> delete the message.
> Pursuant to the provisions of EU Regulation 2016/679 regarding the
> protection of personal data, any personal information you provide through
> this email will be registered by the CNIO Foundation in order to deal with
> content of this email. Your personal data must be processed in order to be
> able to deal with the content and purpose of this message. Your personal
> details will not be passed on to anyone else unless you authorise us to do
> so or we are required to do so by law. You may exercise your rights
> regarding access, rectification, suppression, limitation of processing,
> portability and opposition by writing to the following address: c/Melchor
> Fernandez Almagro 3, 28029 (Madrid). You may contact the Data Protection
> Delegate (Delegado de Protección de Datos) at: delegado_lopd at cnio.es. If
> you require further information about the processing of your personal data,
> go to the following link on our webpage:
> https://www.cnio.es/es/privacidad/index.asp
>
--
Research Project Officer
christine.rogers at mcgill.ca
McGill Centre for Integrative Neuroscience | MCIN.ca
Montreal Neurological Institute-Hospital
McGill University | Montreal | Canada
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