[Loris-dev] upgrading LORIS v22 - v23 error

Tom Beaudry waveflux at gmail.com
Mon Feb 8 15:13:56 EST 2021 

Hey Shen,

What you suggested worked!  Although i had to do a chmod 777 on the
smart/template_c directory.

Thanks again!
Tom

On Mon, Feb 8, 2021 at 1:35 PM Shen Wang <wangshen.mcin at gmail.com> wrote:

> Hi Tom,
> Your drive is not full.
> "make clean"  did  " rm -f smarty/templates_c/*  | rm -rf node_modules| rm
> -rf vendor | rm -fr package-lock.json " .
> "make" will rebuild node_modules and re-run composer etc.
> So you need to make smarty and template_c manually. Sorry to forget tell
> you early.
> mkdir -p ../smarty/templates_c # Setting 770 permissions for templates_c
> sudo chmod 770 ../smarty/templates_c
>
>
>
>
>
> On Mon, 8 Feb 2021 at 13:17, Dave MacFarlane <dave.macfarlane at mcin.ca>
> wrote:
>
>> My first thoughts for reasons that error might come up are: Does the
>> directory /var/www/loris/smarty/templates_c/ exist and is writable by your
>> web server? If so, are all the directories leading up to it executable by
>> your web server? Is the drive full?
>>
>>
>>
>> On Mon, Feb 8, 2021 at 12:49 PM Tom Beaudry <waveflux at gmail.com> wrote:
>>
>>> Hi  DAve and Shen,
>>>
>>> I wasn't able to rollback my version of composer so it made me realize
>>> it was corrupt, so i removed composer, reinstalled it and rolled back to
>>> the version you suggest.  Now i can do composer insall with no problem, and
>>> make clean & make work without errors.
>>>
>>> The only error i'm left with now when i visit the main page is:
>>>
>>> [Mon Feb 08 12:47:27.785383 2021] [php7:error] [pid 7082] [client
>>> 172.16.253.8:54598] PHP Fatal error:  Uncaught  --> Smarty: unable to
>>> write file /var/www/loris/smarty/templates_c/wrt6021792fbfb5b4_53411590 <--
>>> \n  thrown in
>>> /var/www/loris/vendor/smarty/smarty/libs/sysplugins/smarty_internal_runtime_writefile.php
>>> on line 60
>>>
>>> Thanks!
>>> Tom
>>>
>>> [Mon Feb 08 12:47:27.785383 2021] [php7:error] [pid 7082] [client
>>> 172.16.253.8:54598] PHP Fatal error:  Uncaught  --> Smarty: unable to
>>> write file /var/www/loris/smarty/templates_c/wrt6021792fbfb5b4_53411590 <--
>>> \n  thrown in
>>> /var/www/loris/vendor/smarty/smarty/libs/sysplugins/smarty_internal_runtime_writefile.php
>>> on line 60
>>>
>>> On Fri, Feb 5, 2021 at 10:19 AM Dave MacFarlane <dave.macfarlane at mcin.ca>
>>> wrote:
>>>
>>>> What version of composer are you using?
>>>>
>>>> Composer 2 (which was backwards incompatible) came out at around the
>>>> same time as LORIS 23.
>>>>
>>>> If you're using composer 2 you can try `composer self-update 1.10.17`
>>>> to downgrade and then try the
>>>> composer install again.
>>>>
>>>> On Thu, Feb 4, 2021 at 6:00 PM Tom Beaudry <waveflux at gmail.com> wrote:
>>>>
>>>>> Hey Shen,
>>>>>
>>>>> Sadly it's the same error.
>>>>>
>>>>> Tom
>>>>>
>>>>> On Thu, Feb 4, 2021 at 4:39 PM Shen Wang <wangshen.mcin at gmail.com>
>>>>> wrote:
>>>>>
>>>>>> Hi Tom,
>>>>>> Try "composer self-update --snapshot" or "composer self-update
>>>>>> --stable".
>>>>>> Please let me know the result.
>>>>>> Best
>>>>>> Shen
>>>>>>
>>>>>> On Thu, 4 Feb 2021 at 16:27, Tom Beaudry <waveflux at gmail.com> wrote:
>>>>>>
>>>>>>> Hey Shen,
>>>>>>>
>>>>>>> I followed your instructions and can confirm i'm using php 7.4:
>>>>>>> https://docs.google.com/document/d/1QppFZ8MtKoMRltiIQidFDslfVwriuS9cpfuZN49nOZ8/edit?usp=sharing
>>>>>>>
>>>>>>> composer install still fails:
>>>>>>>
>>>>>>>   [ErrorException]
>>>>>>>   Trying to access array offset on value of type null
>>>>>>>
>>>>>>> Thanks!
>>>>>>> Tom
>>>>>>>
>>>>>>> On Thu, Feb 4, 2021 at 4:04 PM Shen Wang <wangshen.mcin at gmail.com>
>>>>>>> wrote:
>>>>>>>
>>>>>>>> Hi Tom,
>>>>>>>> It is very helpful, it means you need to do "composer install"
>>>>>>>> again.
>>>>>>>> if it not works for you then try these steps for Centos.
>>>>>>>> sudo yum-config-manager --disable remi-php80
>>>>>>>> sudo yum-config-manager --enable remi-php74
>>>>>>>> sudo systemctl restart httpd sudo systemctl status httpd
>>>>>>>> /var/www/loris/htdocs$ echo "<?php phpinfo(); ?>" >> test.php
>>>>>>>> Using test.php to check your PHP version in your brower.
>>>>>>>> Best
>>>>>>>> Shen
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> On Thu, 4 Feb 2021 at 15:55, Tom Beaudry <waveflux at gmail.com>
>>>>>>>> wrote:
>>>>>>>>
>>>>>>>>> Hey Shen,
>>>>>>>>>
>>>>>>>>> I checked the apache log and the error is different now:
>>>>>>>>>
>>>>>>>>> [Thu Feb 04 15:54:16.131158 2021] [php7:warn] [pid 5215] [client
>>>>>>>>> 172.16.253.6:62349] PHP Warning:
>>>>>>>>>  require_once(/var/www/loris/htdocs/../vendor/autoload.php): failed to open
>>>>>>>>> stream: No such file or directory in /var/www/loris/htdocs/index.php on
>>>>>>>>> line 18
>>>>>>>>> [Thu Feb 04 15:54:16.131215 2021] [php7:error] [pid 5215] [client
>>>>>>>>> 172.16.253.6:62349] PHP Fatal error:  require_once(): Failed
>>>>>>>>> opening required '/var/www/loris/htdocs/../vendor/autoload.php'
>>>>>>>>> (include_path='.:/usr/share/php:/var/www/loris/project/libraries:/var/www/loris/php/libraries')
>>>>>>>>> in /var/www/loris/htdocs/index.php on line 18
>>>>>>>>>
>>>>>>>>> I'm not sure if that helps figure out what's wrong.
>>>>>>>>>
>>>>>>>>> Thanks again!
>>>>>>>>> Tom
>>>>>>>>>
>>>>>>>>> On Thu, Feb 4, 2021 at 3:45 PM Tom Beaudry <waveflux at gmail.com>
>>>>>>>>> wrote:
>>>>>>>>>
>>>>>>>>>> Hi Shen,
>>>>>>>>>>
>>>>>>>>>> My productions server is CentOS.
>>>>>>>>>>
>>>>>>>>>> If i check what version of php i'm using:
>>>>>>>>>>
>>>>>>>>>> [lorisadmin at loris loris]$ rpm -qa | grep php
>>>>>>>>>> php-json-7.4.15-1.el7.remi.x86_64
>>>>>>>>>> php-pear-1.10.12-5.el7.remi.noarch
>>>>>>>>>> php-7.4.15-1.el7.remi.x86_64
>>>>>>>>>> php-devel-7.4.15-1.el7.remi.x86_64
>>>>>>>>>> php-sodium-7.4.15-1.el7.remi.x86_64
>>>>>>>>>> php-fedora-autoloader-1.0.1-2.el7.noarch
>>>>>>>>>> php-fpm-7.4.15-1.el7.remi.x86_64
>>>>>>>>>> php-gd-7.4.15-1.el7.remi.x86_64
>>>>>>>>>> php-cli-7.4.15-1.el7.remi.x86_64
>>>>>>>>>> php-pdo-7.4.15-1.el7.remi.x86_64
>>>>>>>>>> php-mysqlnd-7.4.15-1.el7.remi.x86_64
>>>>>>>>>> php-bcmath-7.4.15-1.el7.remi.x86_64
>>>>>>>>>> php-xml-7.4.15-1.el7.remi.x86_64
>>>>>>>>>> php-mbstring-7.4.15-1.el7.remi.x86_64
>>>>>>>>>> oniguruma5php-6.9.6-1.el7.remi.x86_64
>>>>>>>>>> php-common-7.4.15-1.el7.remi.x86_64
>>>>>>>>>> php-process-7.4.15-1.el7.remi.x86_64
>>>>>>>>>> php-pecl-mcrypt-1.0.4-1.el7.remi.7.4.x86_64
>>>>>>>>>>
>>>>>>>>>> They are all showing up as 7.4.
>>>>>>>>>>
>>>>>>>>>> Thanks!
>>>>>>>>>> Tom
>>>>>>>>>>
>>>>>>>>>> On Thu, Feb 4, 2021 at 3:37 PM Shen Wang <wangshen.mcin at gmail.com>
>>>>>>>>>> wrote:
>>>>>>>>>>
>>>>>>>>>>> Hi Tom,
>>>>>>>>>>> If you got same error like "Deprecated: Required parameter
>>>>>>>>>>> $ignoreFilters follows optional parameter $packageName " ,
>>>>>>>>>>> It seems like you are still using PHP 8. After downgraded to
>>>>>>>>>>> PHP 7.4, you need to install PHP 7.4 dependencies as well.
>>>>>>>>>>> Try these steps :
>>>>>>>>>>>
>>>>>>>>>>>    1. sudo apt-get install -y php7.4 php7.4-mysql php7.4-xml
>>>>>>>>>>>    php7.4-json php7.4-mbstring php7.4-gd php-ast
>>>>>>>>>>>    2. sudo apt-get install -y composer
>>>>>>>>>>>    3. sudo apt-get install -y libapache2-mod-php7.4
>>>>>>>>>>>    4. sudo a2dismod php8.0
>>>>>>>>>>>    5. sudo a2enmod php7.4
>>>>>>>>>>>    6. sudo service apache2 restart
>>>>>>>>>>>
>>>>>>>>>>> 7, make clean
>>>>>>>>>>> 8, make
>>>>>>>>>>> Good luck.
>>>>>>>>>>> Best
>>>>>>>>>>> Shen
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> On Thu, 4 Feb 2021 at 15:05, Tom Beaudry <waveflux at gmail.com>
>>>>>>>>>>> wrote:
>>>>>>>>>>>
>>>>>>>>>>>> Hey Shen,
>>>>>>>>>>>>
>>>>>>>>>>>> I downgraded to php 7.4 and get the same results.
>>>>>>>>>>>>
>>>>>>>>>>>> What can i try next?
>>>>>>>>>>>> Tom
>>>>>>>>>>>>
>>>>>>>>>>>> On Thu, Feb 4, 2021 at 2:01 PM Shen Wang <
>>>>>>>>>>>> wangshen.mcin at gmail.com> wrote:
>>>>>>>>>>>>
>>>>>>>>>>>>> Hi Tom,
>>>>>>>>>>>>> We don't support PHP 8 with Loris yet. We are working on it.
>>>>>>>>>>>>> For the 23.0-release, you have to use PHP 7.3 or 7.4.
>>>>>>>>>>>>> Best
>>>>>>>>>>>>> Shen
>>>>>>>>>>>>>
>>>>>>>>>>>>> On Thu, 4 Feb 2021 at 13:50, Tom Beaudry <waveflux at gmail.com>
>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>
>>>>>>>>>>>>>> Hey Shen,
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> Unfortunately it didn't work.  Here's the output:
>>>>>>>>>>>>>> https://pastebin.com/raw/ZQjPuAG1
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> I'm using php8.
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> Thanks,
>>>>>>>>>>>>>> Tom
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> On Thu, Feb 4, 2021 at 1:40 PM Shen Wang <
>>>>>>>>>>>>>> wangshen.mcin at gmail.com> wrote:
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> Hi Tom,
>>>>>>>>>>>>>>> You are welcome. I think that you need to remove all the
>>>>>>>>>>>>>>> vendor files.
>>>>>>>>>>>>>>> Try  step 1: "make clean"    (delete all the vendor and
>>>>>>>>>>>>>>> node_modules)
>>>>>>>>>>>>>>>        step 2: "make"             ( run composer install and
>>>>>>>>>>>>>>> npm install ...)
>>>>>>>>>>>>>>> If it still can't work, could you tell me which PHP version
>>>>>>>>>>>>>>> are you using?
>>>>>>>>>>>>>>> Best
>>>>>>>>>>>>>>> Shen
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> On Thu, 4 Feb 2021 at 13:29, Tom Beaudry <waveflux at gmail.com>
>>>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> Hi Shen,
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> Thanks for the answer:  Composer install gives me the
>>>>>>>>>>>>>>>> following error:
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> [lorisadmin at loris loris]$ composer install
>>>>>>>>>>>>>>>> PHP Deprecated:  Required parameter $ignoreFilters follows
>>>>>>>>>>>>>>>> optional parameter $packageName in
>>>>>>>>>>>>>>>> phar:///usr/local/bin/composer/src/Composer/Command/ArchiveCommand.php on
>>>>>>>>>>>>>>>> line 97
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> Deprecated: Required parameter $ignoreFilters follows
>>>>>>>>>>>>>>>> optional parameter $packageName in
>>>>>>>>>>>>>>>> phar:///usr/local/bin/composer/src/Composer/Command/ArchiveCommand.php on
>>>>>>>>>>>>>>>> line 97
>>>>>>>>>>>>>>>> Deprecation Notice: Required parameter $path follows
>>>>>>>>>>>>>>>> optional parameter $schema in
>>>>>>>>>>>>>>>> phar:///usr/local/bin/composer/vendor/justinrainbow/json-schema/src/JsonSchema/Constraints/UndefinedConstraint.php:53
>>>>>>>>>>>>>>>> Deprecation Notice: Required parameter $path follows
>>>>>>>>>>>>>>>> optional parameter $schema in
>>>>>>>>>>>>>>>> phar:///usr/local/bin/composer/vendor/justinrainbow/json-schema/src/JsonSchema/Constraints/UndefinedConstraint.php:97
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>   [ErrorException]
>>>>>>>>>>>>>>>>   Trying to access array offset on value of type null
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> Best,
>>>>>>>>>>>>>>>> Tom
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> On Thu, Feb 4, 2021 at 1:13 PM Shen Wang <
>>>>>>>>>>>>>>>> wangshen.mcin at gmail.com> wrote:
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>> Hi Tom,
>>>>>>>>>>>>>>>>> You need to re-run " composer install " to solve this
>>>>>>>>>>>>>>>>> issue.
>>>>>>>>>>>>>>>>> Good Luck.
>>>>>>>>>>>>>>>>> Best
>>>>>>>>>>>>>>>>> Shen
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>> On Thu, 4 Feb 2021 at 13:01, Tom Beaudry <
>>>>>>>>>>>>>>>>> waveflux at gmail.com> wrote:
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>> Hey Guys,
>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>> I decided to upgrade LORIS v22 to v23 and I ran into this
>>>>>>>>>>>>>>>>>> apache error when i navigate to the homepage in my web browser:
>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>> [Thu Feb 04 12:52:22.608901 2021] [php7:warn] [pid 5215]
>>>>>>>>>>>>>>>>>> [client 172.16.253.6:62122] PHP Warning:
>>>>>>>>>>>>>>>>>>  session_start(): Setting option 'cookie_samesite' failed in
>>>>>>>>>>>>>>>>>> /var/www/loris/php/libraries/NDB_Client.class.inc on line 147
>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>> [Thu Feb 04 12:52:22.610434 2021] [php7:error] [pid 5215]
>>>>>>>>>>>>>>>>>> [client 172.16.253.6:62122] PHP Fatal error*:  Uncaught
>>>>>>>>>>>>>>>>>> Error: Class 'Laminas\\Diactoros\\ServerRequestFactory'*
>>>>>>>>>>>>>>>>>> not found in /var/www/loris/htdocs/index.php:35\nStack trace:\n#0 {main}\n
>>>>>>>>>>>>>>>>>>  thrown in /var/www/loris/htdocs/index.php on line 35
>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>> It seems that the server request is failing:
>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>> $serverrequest = \Laminas\Diactoros\ServerRequestFactory
>>>>>>>>>>>>>>>>>> ::fromGlobals();
>>>>>>>>>>>>>>>>>> 36
>>>>>>>>>>>>>>>>>> <https://github.com/aces/Loris/blob/11e6780c0d0e2f4e33ee915f8258f9222c314892/htdocs/index.php#L36>
>>>>>>>>>>>>>>>>>> Any help would be greatly appreciated!
>>>>>>>>>>>>>>>>>> Tom
>>>>>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>>>>>> Loris-dev mailing list
>>>>>>>>>>>>>>>>>> Loris-dev at bic.mni.mcgill.ca
>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>> --
>>>>>>>>>>>>>>>>> Shen Wang
>>>>>>>>>>>>>>>>> Loris <https://github.com/aces/Loris>  Developer
>>>>>>>>>>>>>>>>> Montreal Neurological Institute
>>>>>>>>>>>>>>>>> McGill University
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> --
>>>>>>>>>>>>>>> Shen Wang
>>>>>>>>>>>>>>> Loris <https://github.com/aces/Loris>  Developer
>>>>>>>>>>>>>>> Montreal Neurological Institute
>>>>>>>>>>>>>>> McGill University
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>>> --
>>>>>>>>>>>>> Shen Wang
>>>>>>>>>>>>> Loris <https://github.com/aces/Loris>  Developer
>>>>>>>>>>>>> Montreal Neurological Institute
>>>>>>>>>>>>> McGill University
>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> --
>>>>>>>>>>> Shen Wang
>>>>>>>>>>> Loris <https://github.com/aces/Loris>  Developer
>>>>>>>>>>> Montreal Neurological Institute
>>>>>>>>>>> McGill University
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>
>>>>>>>> --
>>>>>>>> Shen Wang
>>>>>>>> Loris <https://github.com/aces/Loris>  Developer
>>>>>>>> Montreal Neurological Institute
>>>>>>>> McGill University
>>>>>>>>
>>>>>>>>
>>>>>>
>>>>>> --
>>>>>> Shen Wang
>>>>>> Loris <https://github.com/aces/Loris>  Developer
>>>>>> Montreal Neurological Institute
>>>>>> McGill University
>>>>>>
>>>>>> _______________________________________________
>>>>> Loris-dev mailing list
>>>>> Loris-dev at bic.mni.mcgill.ca
>>>>> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>>>>>
>>>>
>
> --
> Shen Wang
> Loris <https://github.com/aces/Loris>  Developer
> Montreal Neurological Institute
> McGill University
>
>
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