[Loris-dev] upgrading LORIS v22 - v23 error

Shen Wang wangshen.mcin at gmail.com
Mon Feb 8 13:35:23 EST 2021 

Hi Tom,
Your drive is not full.
"make clean"  did  " rm -f smarty/templates_c/*  | rm -rf node_modules| rm
-rf vendor | rm -fr package-lock.json " .
"make" will rebuild node_modules and re-run composer etc.
So you need to make smarty and template_c manually. Sorry to forget tell
you early.
mkdir -p ../smarty/templates_c # Setting 770 permissions for templates_c
sudo chmod 770 ../smarty/templates_c





On Mon, 8 Feb 2021 at 13:17, Dave MacFarlane <dave.macfarlane at mcin.ca>
wrote:

> My first thoughts for reasons that error might come up are: Does the
> directory /var/www/loris/smarty/templates_c/ exist and is writable by your
> web server? If so, are all the directories leading up to it executable by
> your web server? Is the drive full?
>
>
>
> On Mon, Feb 8, 2021 at 12:49 PM Tom Beaudry <waveflux at gmail.com> wrote:
>
>> Hi  DAve and Shen,
>>
>> I wasn't able to rollback my version of composer so it made me realize it
>> was corrupt, so i removed composer, reinstalled it and rolled back to the
>> version you suggest.  Now i can do composer insall with no problem, and
>> make clean & make work without errors.
>>
>> The only error i'm left with now when i visit the main page is:
>>
>> [Mon Feb 08 12:47:27.785383 2021] [php7:error] [pid 7082] [client
>> 172.16.253.8:54598] PHP Fatal error:  Uncaught  --> Smarty: unable to
>> write file /var/www/loris/smarty/templates_c/wrt6021792fbfb5b4_53411590 <--
>> \n  thrown in
>> /var/www/loris/vendor/smarty/smarty/libs/sysplugins/smarty_internal_runtime_writefile.php
>> on line 60
>>
>> Thanks!
>> Tom
>>
>> [Mon Feb 08 12:47:27.785383 2021] [php7:error] [pid 7082] [client
>> 172.16.253.8:54598] PHP Fatal error:  Uncaught  --> Smarty: unable to
>> write file /var/www/loris/smarty/templates_c/wrt6021792fbfb5b4_53411590 <--
>> \n  thrown in
>> /var/www/loris/vendor/smarty/smarty/libs/sysplugins/smarty_internal_runtime_writefile.php
>> on line 60
>>
>> On Fri, Feb 5, 2021 at 10:19 AM Dave MacFarlane <dave.macfarlane at mcin.ca>
>> wrote:
>>
>>> What version of composer are you using?
>>>
>>> Composer 2 (which was backwards incompatible) came out at around the
>>> same time as LORIS 23.
>>>
>>> If you're using composer 2 you can try `composer self-update 1.10.17`
>>> to downgrade and then try the
>>> composer install again.
>>>
>>> On Thu, Feb 4, 2021 at 6:00 PM Tom Beaudry <waveflux at gmail.com> wrote:
>>>
>>>> Hey Shen,
>>>>
>>>> Sadly it's the same error.
>>>>
>>>> Tom
>>>>
>>>> On Thu, Feb 4, 2021 at 4:39 PM Shen Wang <wangshen.mcin at gmail.com>
>>>> wrote:
>>>>
>>>>> Hi Tom,
>>>>> Try "composer self-update --snapshot" or "composer self-update
>>>>> --stable".
>>>>> Please let me know the result.
>>>>> Best
>>>>> Shen
>>>>>
>>>>> On Thu, 4 Feb 2021 at 16:27, Tom Beaudry <waveflux at gmail.com> wrote:
>>>>>
>>>>>> Hey Shen,
>>>>>>
>>>>>> I followed your instructions and can confirm i'm using php 7.4:
>>>>>> https://docs.google.com/document/d/1QppFZ8MtKoMRltiIQidFDslfVwriuS9cpfuZN49nOZ8/edit?usp=sharing
>>>>>>
>>>>>> composer install still fails:
>>>>>>
>>>>>>   [ErrorException]
>>>>>>   Trying to access array offset on value of type null
>>>>>>
>>>>>> Thanks!
>>>>>> Tom
>>>>>>
>>>>>> On Thu, Feb 4, 2021 at 4:04 PM Shen Wang <wangshen.mcin at gmail.com>
>>>>>> wrote:
>>>>>>
>>>>>>> Hi Tom,
>>>>>>> It is very helpful, it means you need to do "composer install"
>>>>>>> again.
>>>>>>> if it not works for you then try these steps for Centos.
>>>>>>> sudo yum-config-manager --disable remi-php80
>>>>>>> sudo yum-config-manager --enable remi-php74
>>>>>>> sudo systemctl restart httpd sudo systemctl status httpd
>>>>>>> /var/www/loris/htdocs$ echo "<?php phpinfo(); ?>" >> test.php
>>>>>>> Using test.php to check your PHP version in your brower.
>>>>>>> Best
>>>>>>> Shen
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> On Thu, 4 Feb 2021 at 15:55, Tom Beaudry <waveflux at gmail.com> wrote:
>>>>>>>
>>>>>>>> Hey Shen,
>>>>>>>>
>>>>>>>> I checked the apache log and the error is different now:
>>>>>>>>
>>>>>>>> [Thu Feb 04 15:54:16.131158 2021] [php7:warn] [pid 5215] [client
>>>>>>>> 172.16.253.6:62349] PHP Warning:
>>>>>>>>  require_once(/var/www/loris/htdocs/../vendor/autoload.php): failed to open
>>>>>>>> stream: No such file or directory in /var/www/loris/htdocs/index.php on
>>>>>>>> line 18
>>>>>>>> [Thu Feb 04 15:54:16.131215 2021] [php7:error] [pid 5215] [client
>>>>>>>> 172.16.253.6:62349] PHP Fatal error:  require_once(): Failed
>>>>>>>> opening required '/var/www/loris/htdocs/../vendor/autoload.php'
>>>>>>>> (include_path='.:/usr/share/php:/var/www/loris/project/libraries:/var/www/loris/php/libraries')
>>>>>>>> in /var/www/loris/htdocs/index.php on line 18
>>>>>>>>
>>>>>>>> I'm not sure if that helps figure out what's wrong.
>>>>>>>>
>>>>>>>> Thanks again!
>>>>>>>> Tom
>>>>>>>>
>>>>>>>> On Thu, Feb 4, 2021 at 3:45 PM Tom Beaudry <waveflux at gmail.com>
>>>>>>>> wrote:
>>>>>>>>
>>>>>>>>> Hi Shen,
>>>>>>>>>
>>>>>>>>> My productions server is CentOS.
>>>>>>>>>
>>>>>>>>> If i check what version of php i'm using:
>>>>>>>>>
>>>>>>>>> [lorisadmin at loris loris]$ rpm -qa | grep php
>>>>>>>>> php-json-7.4.15-1.el7.remi.x86_64
>>>>>>>>> php-pear-1.10.12-5.el7.remi.noarch
>>>>>>>>> php-7.4.15-1.el7.remi.x86_64
>>>>>>>>> php-devel-7.4.15-1.el7.remi.x86_64
>>>>>>>>> php-sodium-7.4.15-1.el7.remi.x86_64
>>>>>>>>> php-fedora-autoloader-1.0.1-2.el7.noarch
>>>>>>>>> php-fpm-7.4.15-1.el7.remi.x86_64
>>>>>>>>> php-gd-7.4.15-1.el7.remi.x86_64
>>>>>>>>> php-cli-7.4.15-1.el7.remi.x86_64
>>>>>>>>> php-pdo-7.4.15-1.el7.remi.x86_64
>>>>>>>>> php-mysqlnd-7.4.15-1.el7.remi.x86_64
>>>>>>>>> php-bcmath-7.4.15-1.el7.remi.x86_64
>>>>>>>>> php-xml-7.4.15-1.el7.remi.x86_64
>>>>>>>>> php-mbstring-7.4.15-1.el7.remi.x86_64
>>>>>>>>> oniguruma5php-6.9.6-1.el7.remi.x86_64
>>>>>>>>> php-common-7.4.15-1.el7.remi.x86_64
>>>>>>>>> php-process-7.4.15-1.el7.remi.x86_64
>>>>>>>>> php-pecl-mcrypt-1.0.4-1.el7.remi.7.4.x86_64
>>>>>>>>>
>>>>>>>>> They are all showing up as 7.4.
>>>>>>>>>
>>>>>>>>> Thanks!
>>>>>>>>> Tom
>>>>>>>>>
>>>>>>>>> On Thu, Feb 4, 2021 at 3:37 PM Shen Wang <wangshen.mcin at gmail.com>
>>>>>>>>> wrote:
>>>>>>>>>
>>>>>>>>>> Hi Tom,
>>>>>>>>>> If you got same error like "Deprecated: Required parameter
>>>>>>>>>> $ignoreFilters follows optional parameter $packageName " ,
>>>>>>>>>> It seems like you are still using PHP 8. After downgraded to PHP
>>>>>>>>>> 7.4, you need to install PHP 7.4 dependencies as well.
>>>>>>>>>> Try these steps :
>>>>>>>>>>
>>>>>>>>>>    1. sudo apt-get install -y php7.4 php7.4-mysql php7.4-xml
>>>>>>>>>>    php7.4-json php7.4-mbstring php7.4-gd php-ast
>>>>>>>>>>    2. sudo apt-get install -y composer
>>>>>>>>>>    3. sudo apt-get install -y libapache2-mod-php7.4
>>>>>>>>>>    4. sudo a2dismod php8.0
>>>>>>>>>>    5. sudo a2enmod php7.4
>>>>>>>>>>    6. sudo service apache2 restart
>>>>>>>>>>
>>>>>>>>>> 7, make clean
>>>>>>>>>> 8, make
>>>>>>>>>> Good luck.
>>>>>>>>>> Best
>>>>>>>>>> Shen
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> On Thu, 4 Feb 2021 at 15:05, Tom Beaudry <waveflux at gmail.com>
>>>>>>>>>> wrote:
>>>>>>>>>>
>>>>>>>>>>> Hey Shen,
>>>>>>>>>>>
>>>>>>>>>>> I downgraded to php 7.4 and get the same results.
>>>>>>>>>>>
>>>>>>>>>>> What can i try next?
>>>>>>>>>>> Tom
>>>>>>>>>>>
>>>>>>>>>>> On Thu, Feb 4, 2021 at 2:01 PM Shen Wang <
>>>>>>>>>>> wangshen.mcin at gmail.com> wrote:
>>>>>>>>>>>
>>>>>>>>>>>> Hi Tom,
>>>>>>>>>>>> We don't support PHP 8 with Loris yet. We are working on it.
>>>>>>>>>>>> For the 23.0-release, you have to use PHP 7.3 or 7.4.
>>>>>>>>>>>> Best
>>>>>>>>>>>> Shen
>>>>>>>>>>>>
>>>>>>>>>>>> On Thu, 4 Feb 2021 at 13:50, Tom Beaudry <waveflux at gmail.com>
>>>>>>>>>>>> wrote:
>>>>>>>>>>>>
>>>>>>>>>>>>> Hey Shen,
>>>>>>>>>>>>>
>>>>>>>>>>>>> Unfortunately it didn't work.  Here's the output:
>>>>>>>>>>>>> https://pastebin.com/raw/ZQjPuAG1
>>>>>>>>>>>>>
>>>>>>>>>>>>> I'm using php8.
>>>>>>>>>>>>>
>>>>>>>>>>>>> Thanks,
>>>>>>>>>>>>> Tom
>>>>>>>>>>>>>
>>>>>>>>>>>>> On Thu, Feb 4, 2021 at 1:40 PM Shen Wang <
>>>>>>>>>>>>> wangshen.mcin at gmail.com> wrote:
>>>>>>>>>>>>>
>>>>>>>>>>>>>> Hi Tom,
>>>>>>>>>>>>>> You are welcome. I think that you need to remove all the
>>>>>>>>>>>>>> vendor files.
>>>>>>>>>>>>>> Try  step 1: "make clean"    (delete all the vendor and
>>>>>>>>>>>>>> node_modules)
>>>>>>>>>>>>>>        step 2: "make"             ( run composer install and
>>>>>>>>>>>>>> npm install ...)
>>>>>>>>>>>>>> If it still can't work, could you tell me which PHP version
>>>>>>>>>>>>>> are you using?
>>>>>>>>>>>>>> Best
>>>>>>>>>>>>>> Shen
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> On Thu, 4 Feb 2021 at 13:29, Tom Beaudry <waveflux at gmail.com>
>>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> Hi Shen,
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> Thanks for the answer:  Composer install gives me the
>>>>>>>>>>>>>>> following error:
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> [lorisadmin at loris loris]$ composer install
>>>>>>>>>>>>>>> PHP Deprecated:  Required parameter $ignoreFilters follows
>>>>>>>>>>>>>>> optional parameter $packageName in
>>>>>>>>>>>>>>> phar:///usr/local/bin/composer/src/Composer/Command/ArchiveCommand.php on
>>>>>>>>>>>>>>> line 97
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> Deprecated: Required parameter $ignoreFilters follows
>>>>>>>>>>>>>>> optional parameter $packageName in
>>>>>>>>>>>>>>> phar:///usr/local/bin/composer/src/Composer/Command/ArchiveCommand.php on
>>>>>>>>>>>>>>> line 97
>>>>>>>>>>>>>>> Deprecation Notice: Required parameter $path follows
>>>>>>>>>>>>>>> optional parameter $schema in
>>>>>>>>>>>>>>> phar:///usr/local/bin/composer/vendor/justinrainbow/json-schema/src/JsonSchema/Constraints/UndefinedConstraint.php:53
>>>>>>>>>>>>>>> Deprecation Notice: Required parameter $path follows
>>>>>>>>>>>>>>> optional parameter $schema in
>>>>>>>>>>>>>>> phar:///usr/local/bin/composer/vendor/justinrainbow/json-schema/src/JsonSchema/Constraints/UndefinedConstraint.php:97
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>   [ErrorException]
>>>>>>>>>>>>>>>   Trying to access array offset on value of type null
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> Best,
>>>>>>>>>>>>>>> Tom
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> On Thu, Feb 4, 2021 at 1:13 PM Shen Wang <
>>>>>>>>>>>>>>> wangshen.mcin at gmail.com> wrote:
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> Hi Tom,
>>>>>>>>>>>>>>>> You need to re-run " composer install " to solve this issue.
>>>>>>>>>>>>>>>> Good Luck.
>>>>>>>>>>>>>>>> Best
>>>>>>>>>>>>>>>> Shen
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> On Thu, 4 Feb 2021 at 13:01, Tom Beaudry <
>>>>>>>>>>>>>>>> waveflux at gmail.com> wrote:
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>> Hey Guys,
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>> I decided to upgrade LORIS v22 to v23 and I ran into this
>>>>>>>>>>>>>>>>> apache error when i navigate to the homepage in my web browser:
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>> [Thu Feb 04 12:52:22.608901 2021] [php7:warn] [pid 5215]
>>>>>>>>>>>>>>>>> [client 172.16.253.6:62122] PHP Warning:
>>>>>>>>>>>>>>>>>  session_start(): Setting option 'cookie_samesite' failed in
>>>>>>>>>>>>>>>>> /var/www/loris/php/libraries/NDB_Client.class.inc on line 147
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>> [Thu Feb 04 12:52:22.610434 2021] [php7:error] [pid 5215]
>>>>>>>>>>>>>>>>> [client 172.16.253.6:62122] PHP Fatal error*:  Uncaught
>>>>>>>>>>>>>>>>> Error: Class 'Laminas\\Diactoros\\ServerRequestFactory'*
>>>>>>>>>>>>>>>>> not found in /var/www/loris/htdocs/index.php:35\nStack trace:\n#0 {main}\n
>>>>>>>>>>>>>>>>>  thrown in /var/www/loris/htdocs/index.php on line 35
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>> It seems that the server request is failing:
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>> $serverrequest = \Laminas\Diactoros\ServerRequestFactory::
>>>>>>>>>>>>>>>>> fromGlobals();
>>>>>>>>>>>>>>>>> 36
>>>>>>>>>>>>>>>>> <https://github.com/aces/Loris/blob/11e6780c0d0e2f4e33ee915f8258f9222c314892/htdocs/index.php#L36>
>>>>>>>>>>>>>>>>> Any help would be greatly appreciated!
>>>>>>>>>>>>>>>>> Tom
>>>>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>>>>> Loris-dev mailing list
>>>>>>>>>>>>>>>>> Loris-dev at bic.mni.mcgill.ca
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> --
>>>>>>>>>>>>>>>> Shen Wang
>>>>>>>>>>>>>>>> Loris <https://github.com/aces/Loris>  Developer
>>>>>>>>>>>>>>>> Montreal Neurological Institute
>>>>>>>>>>>>>>>> McGill University
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> --
>>>>>>>>>>>>>> Shen Wang
>>>>>>>>>>>>>> Loris <https://github.com/aces/Loris>  Developer
>>>>>>>>>>>>>> Montreal Neurological Institute
>>>>>>>>>>>>>> McGill University
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>> --
>>>>>>>>>>>> Shen Wang
>>>>>>>>>>>> Loris <https://github.com/aces/Loris>  Developer
>>>>>>>>>>>> Montreal Neurological Institute
>>>>>>>>>>>> McGill University
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> --
>>>>>>>>>> Shen Wang
>>>>>>>>>> Loris <https://github.com/aces/Loris>  Developer
>>>>>>>>>> Montreal Neurological Institute
>>>>>>>>>> McGill University
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> Shen Wang
>>>>>>> Loris <https://github.com/aces/Loris>  Developer
>>>>>>> Montreal Neurological Institute
>>>>>>> McGill University
>>>>>>>
>>>>>>>
>>>>>
>>>>> --
>>>>> Shen Wang
>>>>> Loris <https://github.com/aces/Loris>  Developer
>>>>> Montreal Neurological Institute
>>>>> McGill University
>>>>>
>>>>> _______________________________________________
>>>> Loris-dev mailing list
>>>> Loris-dev at bic.mni.mcgill.ca
>>>> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>>>>
>>>

-- 
Shen Wang
Loris <https://github.com/aces/Loris>  Developer
Montreal Neurological Institute
McGill University
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