[Loris-dev] question regarding MRI uploader

Ioannis Pappas ioannis at berkeley.edu
Wed Mar 4 20:03:21 EST 2020


Hi loris dev team
I have a question about uploading some of the data.

For now I am experimenting with the GUI and I uploaded a .zip folder
containing some BOLD for one participant. However, I am getting an error
message saying that it cannot read the PatientName field in one of the
dicoms. However that dicom header field exists (itself is a struct
containing a field named FamilyName with the name of the patient). Now the
bar is stuck and it says "in progress". What is your advice on this?

2. I am still confused as to how each uploaded dicom zip will be assigned
to each mri type via the mri_protocol table. For example if I upload the
pscid_candid_V1_BOLD_resting_MtzVA_8.zip file that corresponds to my BOLD
data, is the regex expression in the mri_protocol the one that I will need
to modify in order to assign my mri_scan_type of bold to that particular
upload?

3. What is the easiest way to remove patients and their associated data?
For example now my data is stuck "in progress" and I would like to get rid
of it.

Thank you very much in advance.
Best wishes,
Ioannis
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