[Loris-dev] Issue dcm2mnc z_space=1
Cecile Madjar
cecile.madjar at mcin.ca
Wed Jun 17 13:36:36 EDT 2020
Hi Alfredo,
not sure exactly why this is happening for this specific version of
dcm2mnc. I am far from being an expert in dcm2mnc... However, I was lucky
enough to get a more recent dcm2mnc from Bert a year ago that fixed a few
issues (unfortunately not all) but maybe this version would fix the problem
you are encountering? Would you mind testing that last version?
Here is a link to the dcm2mnc binaries compiled for CentOS 7 and Ubuntu 16.
Hopefully that would work for you.
https://github.com/cmadjar/minc-tools/releases
If that doesn't work, maybe you can create an issue on the minc-tools
Github repository for the MINC tools developers? Here is the link to where
you could post an issue: https://github.com/BIC-MNI/minc-tools/issues
In the hope that helps.
Best,
Cécile
On Wed, Jun 17, 2020 at 1:29 PM Morales Pinzon, Alfredo <
AMORALESPINZON at bwh.harvard.edu> wrote:
> Dear LorisDev team,
>
> We are facing an issue with some Dicoms (~400 Dicom studies) being
> converted to minc files having only one slide (z_space=1) when importing
> them in LORIS. This issue however seems to be happening in the version
> 2.3.01 of dcm2mnc used by LORIS:
>
> ===
> $ dcm2mnc -version
>
> program: 2.3.01 built Jan 17 2018 17:39:49
> libminc: 2.4.02
> netcdf : 4.5.0 of Jan 17 2018 17:09:58 $
> HDF5 : 1.8.20
> ===
>
> but not in version 2.0.07, which we have in a different environment:
>
> ===
> $ dcm2mnc -version
>
> program: 2.0.07 built Oct 31 2017 14:03:56
> libminc: 2.2.00
> netcdf : 4.2.1 of Oct 31 2017 13:59:53 $
> HDF5 : 1.8.8
> ===
>
> I am attaching the output I get when converting a set of Dicoms for one
> acquisition and also the mncheader of the created file. Do you know why
> this might be happening? I can share a deidentified testing Dicom if this
> helps.
>
> Regards,
> Alfredo.
>
> Output dcm2mnc:
>
> ===
> $ dcm2mnc Dicom-pdw/ .
> Checking file types...
> File Dicom-pdw/000001.dcm appears to be DICOM (CD/Export).
> Parsing 60 files
> |<--------------------------------------------------->|
> Sorting 60 files... Done sorting files.
> Processing files, one series at a time...
> INFO: Number of distinct coordinates: 60
> WARNING: Acquisition number is not informative.
> WARNING: Image number is a mystery.
> WARNING: Minimum image number is 4
> WARNING: Temporal position identifier is useless.
> INFO: Acquisition number ranges from 1 to 1
> INFO: Image number ranges from 4 to 63
> INFO: Temporal position id ranges from -1 to -1.
> -Parsing series info |<--First Slice at 0,102.006497,0.000000
> |
> First Echo at 1,0.012000,0.000000
> First Time at 4,-61.117167,0.000000
> First Phase at 1,0.000000,0.000000
> First ChmSh at 1,0.000000,0.000000
> Warning: merging extra indices on Time axis: 1 5
> ->Warning: merging extra indices on Time axis: 1 6
> ->Warning: merging extra indices on Time axis: 1 7
> ->Warning: merging extra indices on Time axis: 1 8
> ->Warning: merging extra indices on Time axis: 1 9
> ->Warning: merging extra indices on Time axis: 1 10
> Warning: merging extra indices on Time axis: 1 11
> ->Warning: merging extra indices on Time axis: 1 12
> ->Warning: merging extra indices on Time axis: 1 13
> ->Warning: merging extra indices on Time axis: 1 14
> ->Warning: merging extra indices on Time axis: 1 15
> ->Warning: merging extra indices on Time axis: 1 16
> ->Warning: merging extra indices on Time axis: 1 17
> Warning: merging extra indices on Time axis: 1 18
> ->Warning: merging extra indices on Time axis: 1 19
> ->Warning: merging extra indices on Time axis: 1 20
> ->Warning: merging extra indices on Time axis: 1 21
> ->Warning: merging extra indices on Time axis: 1 22
> ->Warning: merging extra indices on Time axis: 1 23
> Warning: merging extra indices on Time axis: 1 24
> ->Warning: merging extra indices on Time axis: 1 25
> ->Warning: merging extra indices on Time axis: 1 26
> ->Warning: merging extra indices on Time axis: 1 27
> ->Warning: merging extra indices on Time axis: 1 28
> ->Warning: merging extra indices on Time axis: 1 29
> ->Warning: merging extra indices on Time axis: 1 30
> Warning: merging extra indices on Time axis: 1 31
> ->Warning: merging extra indices on Time axis: 1 32
> ->Warning: merging extra indices on Time axis: 1 33
> ->Warning: merging extra indices on Time axis: 1 34
> ->Warning: merging extra indices on Time axis: 1 35
> ->Warning: merging extra indices on Time axis: 1 36
> Warning: merging extra indices on Time axis: 1 37
> ->Warning: merging extra indices on Time axis: 1 38
> ->Warning: merging extra indices on Time axis: 1 39
> ->Warning: merging extra indices on Time axis: 1 40
> ->Warning: merging extra indices on Time axis: 1 41
> ->Warning: merging extra indices on Time axis: 1 42
> ->Warning: merging extra indices on Time axis: 1 43
> Warning: merging extra indices on Time axis: 1 44
> ->Warning: merging extra indices on Time axis: 1 45
> ->Warning: merging extra indices on Time axis: 1 46
> ->Warning: merging extra indices on Time axis: 1 47
> ->Warning: merging extra indices on Time axis: 1 48
> ->Warning: merging extra indices on Time axis: 1 49
> Warning: merging extra indices on Time axis: 1 50
> ->Warning: merging extra indices on Time axis: 1 51
> ->Warning: merging extra indices on Time axis: 1 52
> ->Warning: merging extra indices on Time axis: 1 53
> ->Warning: merging extra indices on Time axis: 1 54
> ->Warning: merging extra indices on Time axis: 1 55
> ->Warning: merging extra indices on Time axis: 1 56
> Warning: merging extra indices on Time axis: 1 57
> ->Warning: merging extra indices on Time axis: 1 58
> ->Warning: merging extra indices on Time axis: 1 59
> ->Warning: merging extra indices on Time axis: 1 60
> ->Warning: merging extra indices on Time axis: 1 61
> ->Warning: merging extra indices on Time axis: 1 62
> ->Warning: merging extra indices on Time axis: 1 63
> WARNING: Age was not numeric!!
> -Creating minc file
> |<--------------------------------------------------->|
> Done processing files.
> ===
>
> mnc header
> ===
> $ mincheader abc.mnc
> hdf5 abc {
> dimensions:
> xspace = 256 ;
> yspace = 256 ;
> zspace = 1 ;
> variables:
> short image(zspace, yspace, xspace) ;
> image:version = "MINC Version 1.0" ;
> image:vartype = "group________" ;
> image:valid_range = 0., 4095. ;
> image:varid = "MINC standard variable" ;
> image:complete = "true_" ;
> image:dimorder = "zspace,yspace,xspace" ;
> image:signtype = "unsigned" ;
> double image-min(zspace) ;
> image-min:version = "MINC Version 1.0" ;
> image-min:vartype = "var_attribute" ;
> image-min:varid = "MINC standard variable" ;
> image-min:dimorder = "zspace" ;
> double image-max(zspace) ;
> image-max:version = "MINC Version 1.0" ;
> image-max:vartype = "var_attribute" ;
> image-max:varid = "MINC standard variable" ;
> image-max:dimorder = "zspace" ;
> int xspace ;
> xspace:version = "MINC Version 1.0" ;
> xspace:spacetype = "native____" ;
> xspace:vartype = "dimension____" ;
> xspace:start = 125. ;
> xspace:spacing = "regular__" ;
> xspace:alignment = "centre" ;
> xspace:direction_cosines = 1., -0., 0. ;
> xspace:comments = "X increases from patient left to right"
> ;
> xspace:varid = "MINC standard variable" ;
> xspace:length = 256 ;
> xspace:step = -0.9765625 ;
> int yspace ;
> yspace:version = "MINC Version 1.0" ;
> yspace:spacetype = "native____" ;
> yspace:vartype = "dimension____" ;
> yspace:start = 114.989938629699 ;
> yspace:spacing = "regular__" ;
> yspace:alignment = "centre" ;
> yspace:direction_cosines = 0., 0.996194701817766,
> 0.0871557001590339 ;
> yspace:comments = "Y increases from patient posterior to
> anterior" ;
> yspace:varid = "MINC standard variable" ;
> yspace:length = 256 ;
> yspace:step = -0.9765625 ;
> double zspace ;
> zspace:version = "MINC Version 1.0" ;
> zspace:spacetype = "native____" ;
> zspace:vartype = "dimension____" ;
> zspace:start = 102.00649652328 ;
> zspace:spacing = "regular__" ;
> zspace:alignment = "centre" ;
> zspace:direction_cosines = -0., -0.0871557001590339,
> 0.996194701817766 ;
> zspace:comments = "Z increases from patient inferior to
> superior" ;
> zspace:varid = "MINC standard variable" ;
> zspace:length = 1 ;
> zspace:step = 3. ;
> int acquisition ;
> acquisition:version = "MINC Version 1.0" ;
> acquisition:scanning_sequence = "tse1-3" ;
> acquisition:percent_phase_fov = 100. ;
> acquisition:phase_enc_dir = "ROW " ;
> acquisition:acquisition_id = "2" ;
> acquisition:vartype = "group________" ;
> acquisition:slice_thickness = 3. ;
> acquisition:echo_number = 1. ;
> acquisition:imaging_frequency = 40461870. ;
> acquisition:injection_route = "" ;
> acquisition:injection_minute = 0 ;
> acquisition:window_width = 309. ;
> acquisition:series_time = "163538.580000 " ;
> acquisition:mr_acq_type = "2D" ;
> acquisition:num_dyn_scans = 1. ;
> acquisition:percent_sampling = 100. ;
> acquisition:SAR = 0. ;
> acquisition:injection_seconds = 0. ;
> acquisition:series_description = "pdw " ;
> acquisition:echo_train_length = 1. ;
> acquisition:repetition_time = 2.76 ;
> acquisition:acquisition_time = "163437.462833 " ;
> acquisition:comments = "Anonymized" ;
> acquisition:image_time = "163939.665000 " ;
> acquisition:num_averages = 1. ;
> acquisition:imaged_nucleus = "1H" ;
> acquisition:flip_angle = 180. ;
> acquisition:injection_day = 0 ;
> acquisition:tracer = "�����" ;
> acquisition:injection_hour = 0 ;
> acquisition:injection_year = 0 ;
> acquisition:varid = "MINC standard variable" ;
> acquisition:injection_volume = 4.94065645841247e-323 ;
> acquisition:injection_time = "\b" ;
> acquisition:image_type = "DERIVED\\SECONDARY\\OTHER " ;
> acquisition:start_time = "20090324 163029.686000 " ;
> acquisition:window_center = 131. ;
> acquisition:injection_month = 0 ;
> acquisition:receive_coil = "CP Head " ;
> acquisition:echo_time = 0.012 ;
> int dicom_0x0008 ;
> dicom_0x0008:el_0x0018 =
> "1.3.12.2.1107.5.2.2.9082.20090324163538000002004" ;
> dicom_0x0008:el_0x0090 = "Anonymized" ;
> dicom_0x0008:el_0x1090 = "MAGNETOM EXPERT " ;
> dicom_0x0008:el_0x0021 = "20090324" ;
> dicom_0x0008:vartype = "group________" ;
> dicom_0x0008:el_0x0000 = 524 ;
> dicom_0x0008:el_0x1010 = "Anonymized" ;
> dicom_0x0008:el_0x0030 = "163029.686000 " ;
> dicom_0x0008:el_0x0031 = "163538.580000 " ;
> dicom_0x0008:el_0x0020 = "20090324" ;
> dicom_0x0008:el_0x103e = "pdw " ;
> dicom_0x0008:el_0x0080 = "Anonymized" ;
> dicom_0x0008:el_0x0022 = "20090324" ;
> dicom_0x0008:el_0x0060 = "MR" ;
> dicom_0x0008:el_0x0016 = "1.2.840.10008.5.1.4.1.1.4" ;
> dicom_0x0008:el_0x0070 = "SIEMENS " ;
> dicom_0x0008:el_0x2111 = "Lossless JPEG compression,
> selection value 1, point transform 0, compression ratio 1.5987 " ;
> dicom_0x0008:el_0x0050 = "Anonymized" ;
> dicom_0x0008:varid = "MNI DICOM variable" ;
> dicom_0x0008:el_0x0008 = "DERIVED\\SECONDARY\\OTHER " ;
> dicom_0x0008:el_0x0005 = "ISO_IR 100" ;
> dicom_0x0008:el_0x0023 = "20090324" ;
> dicom_0x0008:el_0x0032 = "163437.462833 " ;
> dicom_0x0008:el_0x0033 = "163939.665000 " ;
> int dicom_0x0009 ;
> dicom_0x0009:el_0x0010 = "SPI RELEASE 1 " ;
> dicom_0x0009:vartype = "group________" ;
> dicom_0x0009:el_0x1210 = "STANDARD" ;
> dicom_0x0009:el_0x1227 = "163337.000000 " ;
> dicom_0x0009:el_0x0000 = 332 ;
> dicom_0x0009:el_0x1010 = "SPI VERSION 01.00 " ;
> dicom_0x0009:el_0x1320 = "VC" ;
> dicom_0x0009:el_0x0012 = "SIEMENS CM VA0 CMS " ;
> dicom_0x0009:el_0x1041 = "MRUPNONE" ;
> dicom_0x0009:el_0x1226 = "20090324" ;
> dicom_0x0009:el_0x1213 = " 0" ;
> dicom_0x0009:el_0x1214 = " 0" ;
> dicom_0x0009:el_0x0013 = "SIEMENS CM VA0 LAB " ;
> dicom_0x0009:el_0x1015 = "049S01MR012009032416400317" ;
> dicom_0x0009:varid = "MNI DICOM variable" ;
> dicom_0x0009:el_0x1316 = "728b43ed" ;
> dicom_0x0009:el_0x1212 = 0b, 0b, 0b, 0b ;
> dicom_0x0009:el_0x1040 = 0b, 0b ;
> int dicom_0x0010 ;
> dicom_0x0010:el_0x0010 = "ABC" ;
> dicom_0x0010:vartype = "group________" ;
> dicom_0x0010:el_0x0000 = 154 ;
> dicom_0x0010:el_0x1010 = "Anonymized" ;
> dicom_0x0010:el_0x0030 = "SA " ;
> dicom_0x0010:el_0x1030 = "57" ;
> dicom_0x0010:el_0x0040 = "Anonymized" ;
> dicom_0x0010:el_0x0020 = "ABC" ;
> dicom_0x0010:varid = "MNI DICOM variable" ;
> int dicom_0x0011 ;
> dicom_0x0011:el_0x0010 = "SPI RELEASE 1 " ;
> dicom_0x0011:vartype = "group________" ;
> dicom_0x0011:el_0x1123 = " 57" ;
> dicom_0x0011:el_0x0000 = 126 ;
> dicom_0x0011:el_0x1111 = "163029.686000 " ;
> dicom_0x0011:el_0x1110 = "20090324" ;
> dicom_0x0011:el_0x0011 = "SIEMENS CM VA0 CMS " ;
> dicom_0x0011:varid = "MNI DICOM variable" ;
> int dicom_0x0018 ;
> dicom_0x0018:el_0x0086 = " 1" ;
> dicom_0x0018:el_0x0021 = "NONE" ;
> dicom_0x0018:el_0x1020 = "VB33G " ;
> dicom_0x0018:el_0x0024 = "tse1-3" ;
> dicom_0x0018:vartype = "group________" ;
> dicom_0x0018:el_0x5100 = "HFS " ;
> dicom_0x0018:el_0x1000 = " 9082" ;
> dicom_0x0018:el_0x0000 = 420 ;
> dicom_0x0018:el_0x0091 = "1 " ;
> dicom_0x0018:el_0x0093 = "100 " ;
> dicom_0x0018:el_0x0094 = "100 " ;
> dicom_0x0018:el_0x0085 = "1H" ;
> dicom_0x0018:el_0x0083 = "1 " ;
> dicom_0x0018:el_0x1314 = "180 " ;
> dicom_0x0018:el_0x0087 = "0.9500702 " ;
> dicom_0x0018:el_0x1201 = "153242.000000 " ;
> dicom_0x0018:el_0x0020 = "RM" ;
> dicom_0x0018:el_0x0080 = "002.760000E+03" ;
> dicom_0x0018:el_0x1312 = "ROW " ;
> dicom_0x0018:el_0x0050 = "003.000000E+00" ;
> dicom_0x0018:el_0x1310 = 0s, 256s, 252s, 0s ;
> dicom_0x0018:varid = "MNI DICOM variable" ;
> dicom_0x0018:el_0x1250 = "CP Head " ;
> dicom_0x0018:el_0x1316 = "0 " ;
> dicom_0x0018:el_0x0023 = "2D" ;
> dicom_0x0018:el_0x0081 = "001.200000E+01" ;
> dicom_0x0018:el_0x1200 = "20050304" ;
> dicom_0x0018:el_0x0025 = "N " ;
> dicom_0x0018:el_0x0088 = "0 " ;
> dicom_0x0018:el_0x0084 = "004.046187E+01" ;
> int dicom_0x0019 ;
> dicom_0x0019:el_0x1296 = 1b, 39b, 0b, 0b, 1b, 39b, 0b, 0b,
> 2b, 0b, 0b, 0b ;
> dicom_0x0019:el_0x14d6 = " 0" ;
> dicom_0x0019:el_0x14a6 =
> "001.000000E+02\\04.348140E+00\\04.422564E+00" ;
> dicom_0x0019:el_0x1455 = "001.022977E+02" ;
> dicom_0x0019:el_0x1482 = "002.000000E+02" ;
> dicom_0x0019:el_0x1285 = "NONE " ;
> dicom_0x0019:el_0x14a2 = "001.034203E+00" ;
> dicom_0x0019:el_0x1245 = " 1" ;
> dicom_0x0019:el_0x1422 = "002.700000E+01" ;
> dicom_0x0019:el_0x0010 = "SIEMENS CM VA0 CMS " ;
> dicom_0x0019:el_0x1020 = "EXAMNONE" ;
> dicom_0x0019:vartype = "group________" ;
> dicom_0x0019:el_0x14a0 = " 1" ;
> dicom_0x0019:el_0x1211 = "002.388881E+02" ;
> dicom_0x0019:el_0x1294 = "001.570796E+00" ;
> dicom_0x0019:el_0x1471 = "004.698000E+00" ;
> dicom_0x0019:el_0x14d3 = "001.000000E+00" ;
> dicom_0x0019:el_0x1060 = "131072" ;
> dicom_0x0019:el_0x1297 = 64b, 8b, -64b, 1b, -22b, -76b,
> -1b, -1b ;
> dicom_0x0019:el_0x1210 = "002.388881E+02" ;
> dicom_0x0019:el_0x1472 = "008.000000E+00" ;
> dicom_0x0019:el_0x0000 = 1900 ;
> dicom_0x0019:el_0x1231 = " 256" ;
> dicom_0x0019:el_0x14da = "PLUSX " ;
> dicom_0x0019:el_0x1228 = " -126" ;
> dicom_0x0019:el_0x0015 = "SIEMENS CM VA0 ACQU" ;
> dicom_0x0019:el_0x1010 = " 50" ;
> dicom_0x0019:el_0x14d2 = "NONE" ;
> dicom_0x0019:el_0x0012 = "SIEMENS MR VA0 GEN " ;
> dicom_0x0019:el_0x1451 = "005.500000E+01" ;
> dicom_0x0019:el_0x14a5 =
> "001.500000E+00\\05.203557E-02\\00.000000E+00" ;
> dicom_0x0019:el_0x1230 = " 256" ;
> dicom_0x0019:el_0x0014 = "SIEMENS MR VA0 COAD" ;
> dicom_0x0019:el_0x1226 = " 125" ;
> dicom_0x0019:el_0x1512 = "SIEMENS " ;
> dicom_0x0019:el_0x1421 = " 2" ;
> dicom_0x0019:el_0x1030 = "A IRS " ;
> dicom_0x0019:el_0x1414 = "001.000000E+01" ;
> dicom_0x0019:el_0x1213 = "002.000000E+01" ;
> dicom_0x0019:el_0x1260 = "001.800000E+02" ;
> dicom_0x0019:el_0x1298 =
> "000.000000E+00\\00.000000E+00\\00.000000E+00" ;
> dicom_0x0019:el_0x14d5 = " 0" ;
> dicom_0x0019:el_0x1456 = " 25000" ;
> dicom_0x0019:el_0x1454 = "-01.000000E+00" ;
> dicom_0x0019:el_0x1240 = " 0" ;
> dicom_0x0019:el_0x1460 = "006.025031E-01" ;
> dicom_0x0019:el_0x1420 = "001.660000E+02" ;
> dicom_0x0019:el_0x1470 = "004.698000E+00" ;
> dicom_0x0019:el_0x1424 = "003.908454E+01" ;
> dicom_0x0019:el_0x1510 =
> "/usr/appl/proto/014/c/head/LAQ302/PDW_AX.prg" ;
> dicom_0x0019:el_0x1290 = " 0" ;
> dicom_0x0019:el_0x1480 =
> "001.430000E+02\\01.570000E+02\\01.450000E+02" ;
> dicom_0x0019:el_0x1221 = " 252" ;
> dicom_0x0019:el_0x1450 = "008.900000E+01" ;
> dicom_0x0019:el_0x1220 = " 252" ;
> dicom_0x0019:el_0x1426 = "006.584084E+01" ;
> dicom_0x0019:el_0x1214 = " 1" ;
> dicom_0x0019:el_0x14d8 = " 129" ;
> dicom_0x0019:el_0x1216 = 1b, 1b, 69b, 0b, 64b, 0b, 0b, 0b ;
> dicom_0x0019:el_0x1281 = "NONE " ;
> dicom_0x0019:el_0x1511 =
> "/usr/appl/sequence/tse3_12b195.wfc" ;
> dicom_0x0019:el_0x1287 = "NONE " ;
> dicom_0x0019:el_0x14d4 = " 256" ;
> dicom_0x0019:varid = "MNI DICOM variable" ;
> dicom_0x0019:el_0x1218 = -67b, -31b, 2b, 54b ;
> dicom_0x0019:el_0x1412 = "009.500702E-01" ;
> dicom_0x0019:el_0x1250 = " 1" ;
> dicom_0x0019:el_0x1452 = "005.500000E+01" ;
> dicom_0x0019:el_0x1283 = "NONE " ;
> dicom_0x0019:el_0x14b0 = 0b, 0b, 0b, 0b ;
> dicom_0x0019:el_0x1270 = " 1" ;
> dicom_0x0019:el_0x1212 = "003.979688E-43" ;
> dicom_0x0019:el_0x1050 = " 0" ;
> dicom_0x0019:el_0x14d7 = " 129" ;
> dicom_0x0019:el_0x1513 = "tse1-3" ;
> dicom_0x0019:el_0x14d9 = " 1" ;
> dicom_0x0019:el_0x14d1 = "000.000000E+00" ;
> dicom_0x0019:el_0x1416 = "001.542969E+00\\09.765625E-02" ;
> dicom_0x0019:el_0x1462 = "006.281846E-01" ;
> int dicom_0x0020 ;
> dicom_0x0020:el_0x4000 = "Anonymized" ;
> dicom_0x0020:el_0x0010 = "0 " ;
> dicom_0x0020:vartype = "group________" ;
> dicom_0x0020:el_0x000d =
> "1.3.12.2.1107.5.2.2.9082.20090324163029000" ;
> dicom_0x0020:el_0x0000 = 526 ;
> dicom_0x0020:el_0x0012 = " 1" ;
> dicom_0x0020:el_0x1041 = "-01.020065E+02" ;
> dicom_0x0020:el_0x0030 =
> "-01.245117E+02\\-1.051755E+02\\01.115978E+02" ;
> dicom_0x0020:el_0x1001 = " 1" ;
> dicom_0x0020:el_0x0013 = " 4" ;
> dicom_0x0020:el_0x000e =
> "1.3.12.2.1107.5.2.2.9082.20090324163538000002" ;
> dicom_0x0020:el_0x0011 = " 2" ;
> dicom_0x0020:el_0x0070 = "PLANAR" ;
> dicom_0x0020:el_0x0050 = "-01.020065E+02" ;
> dicom_0x0020:varid = "MNI DICOM variable" ;
> dicom_0x0020:el_0x0052 =
> "1.3.12.2.1107.5.2.2.9082.20090324163337000" ;
> dicom_0x0020:el_0x0032 = "-125\\-105.66192\\111.64036 " ;
> dicom_0x0020:el_0x0035 =
> "001.000000E+00\\-0.000000E+00\\-0.000000E+00\\00.000000E+00\\09.961947E-01\\-8.715570E-02"
> ;
> dicom_0x0020:el_0x0037 =
> "1\\-0\\-0\\0\\0.9961947\\-0.0871557" ;
> int dicom_0x0021 ;
> dicom_0x0021:el_0x1163 = "-01.020065E+02" ;
> dicom_0x0021:el_0x1124 = "000.000000E+00\\00.000000E+00" ;
> dicom_0x0021:el_0x1331 = " 0" ;
> dicom_0x0021:el_0x0010 = "SIEMENS MED " ;
> dicom_0x0021:el_0x1020 = 0b, 0b ;
> dicom_0x0021:el_0x1120 = "002.500000E+02\\02.500000E+02" ;
> dicom_0x0021:vartype = "group________" ;
> dicom_0x0021:el_0x1130 = "HEAD" ;
> dicom_0x0021:el_0x1344 = "000.000000E+00" ;
> dicom_0x0021:el_0x1322 = " 0" ;
> dicom_0x0021:el_0x1170 = "R \\AH\\HP " ;
> dicom_0x0021:el_0x2308 =
> "000.000000E+00\\00.000000E+00\\00.000000E+00" ;
> dicom_0x0021:el_0x2304 =
> "000.000000E+00\\00.000000E+00\\00.000000E+00" ;
> dicom_0x0021:el_0x0000 = 1512 ;
> dicom_0x0021:el_0x1342 = " 1" ;
> dicom_0x0021:el_0x2303 = "002.500000E+04" ;
> dicom_0x0021:el_0x2309 = "000.000000E+00" ;
> dicom_0x0021:el_0x1334 = " 0" ;
> dicom_0x0021:el_0x1182 = "MEA " ;
> dicom_0x0021:el_0x1341 = " 60" ;
> dicom_0x0021:el_0x116b =
> "000.000000E+00\\-9.961947E-01\\08.715570E-02" ;
> dicom_0x0021:el_0x2300 = "IMAG" ;
> dicom_0x0021:el_0x2310 = "004.095000E+03" ;
> dicom_0x0021:el_0x1370 = " 1" ;
> dicom_0x0021:el_0x1350 = 0b, 0b, 0b, 0b ;
> dicom_0x0021:el_0x1126 = " 0" ;
> dicom_0x0021:el_0x2331 =
> "005.500000E+01\\05.500000E+01\\05.500000E+01\\05.500000E+01\\05.500000E+01\\05.500000E+01\\05.500000E+01\\05.500000E+01\\05.500000E+01\\05.500000E+01\\05.500000E+01\\05.500000E+01\\05.500000E+01\\05.500000E+01\\05.500000E+01\\05.500000E+01"
> ;
> dicom_0x0021:el_0x2305 =
> "000.000000E+00\\00.000000E+00\\00.000000E+00" ;
> dicom_0x0021:el_0x1165 = 5b, 0b ;
> dicom_0x0021:el_0x1356 = "002.760000E+03" ;
> dicom_0x0021:el_0x2301 = " 256" ;
> dicom_0x0021:el_0x116a =
> "001.000000E+00\\00.000000E+00\\00.000000E+00" ;
> dicom_0x0021:el_0x1324 = " 0" ;
> dicom_0x0021:el_0x1160 =
> "000.000000E+00\\-1.886242E+01\\-1.007459E+02" ;
> dicom_0x0021:el_0x2307 = " 252\\ 256\\ 0" ;
> dicom_0x0021:el_0x0013 = "SIEMENS MR VA0 GEN " ;
> dicom_0x0021:el_0x1161 =
> "-00.000000E+00\\08.715570E-02\\09.961947E-01" ;
> dicom_0x0021:el_0x1171 = "L \\PF\\FA " ;
> dicom_0x0021:el_0x0011 = "SIEMENS CM VA0 CMS " ;
> dicom_0x0021:el_0x1330 = " 0" ;
> dicom_0x0021:el_0x2306 = " 252\\ 256\\ 0" ;
> dicom_0x0021:el_0x1132 = "HEAD" ;
> dicom_0x0021:el_0x1339 = "003.000000E+00" ;
> dicom_0x0021:varid = "MNI DICOM variable" ;
> dicom_0x0021:el_0x0023 = "SIEMENS MR VA0 RAW " ;
> dicom_0x0021:el_0x1340 = " 60" ;
> dicom_0x0021:el_0x2302 = " 256" ;
> dicom_0x0021:el_0x1122 = "001.000000E+00" ;
> dicom_0x0021:el_0x1343 = " 1" ;
> dicom_0x0021:el_0x134f = "INTERLEAVED " ;
> int dicom_0x0028 ;
> dicom_0x0028:el_0x0010 = 256s ;
> dicom_0x0028:vartype = "group________" ;
> dicom_0x0028:el_0x0004 = "MONOCHROME2 " ;
> dicom_0x0028:el_0x0103 = 0s ;
> dicom_0x0028:el_0x0000 = 184 ;
> dicom_0x0028:el_0x0100 = 16s ;
> dicom_0x0028:el_0x0102 = 11s ;
> dicom_0x0028:el_0x0030 = "009.765625E-01\\09.765625E-01" ;
> dicom_0x0028:el_0x0200 = 32736s ;
> dicom_0x0028:el_0x0040 = "RECT" ;
> dicom_0x0028:el_0x0011 = 256s ;
> dicom_0x0028:varid = "MNI DICOM variable" ;
> dicom_0x0028:el_0x0101 = 12s ;
> dicom_0x0028:el_0x1050 = "131\\ 131 " ;
> dicom_0x0028:el_0x1051 = "309\\ 309 " ;
> dicom_0x0028:el_0x0002 = 1s ;
> int dicom_0x0029 ;
> dicom_0x0029:el_0x1120 = "Anonymized" ;
> dicom_0x0029:vartype = "group________" ;
> dicom_0x0029:el_0x0000 = 92 ;
> dicom_0x0029:el_0x1110 = "STD 1 " ;
> dicom_0x0029:el_0x1152 = " 1" ;
> dicom_0x0029:el_0x0011 = "SIEMENS CM VA0 CMS " ;
> dicom_0x0029:varid = "MNI DICOM variable" ;
> int dicom_0x0051 ;
> dicom_0x0051:el_0x0010 = "SIEMENS CM VA0 CMS " ;
> dicom_0x0051:vartype = "group________" ;
> dicom_0x0051:el_0x0000 = 366 ;
> dicom_0x0051:el_0x1010 = "CDE\\F 59Y\\H-SP-CR\\IMAGE
> 4\\\\24-MAR-2009\\16:35\\TA 03:58\\AC 1\\\\\\CTO,, C\\VB33G\\ 252
> *256 s\\tse1-3 180\\SCAN 1\\TR 2760.0\\TE 12.0/1\\\\?\\?\\SL
> 3.0\\SP -102.0\\Tra>Cor -5\\\\FoV 250*250\\?\\?\\TP
> 0\\?\\?\\?\\?\\SER 1-2\\\\01-JAN-1900\\*\\\\STU/IMA 2/4\\\\MAGNETOM
> EXPERT\\ABC\\16:35:39 " ;
> dicom_0x0051:varid = "MNI DICOM variable" ;
> int dicom_groups ;
> dicom_groups:vartype = "group________" ;
> dicom_groups:varid = "MNI DICOM variable" ;
> int dicominfo ;
> dicominfo:vartype = "group________" ;
> dicominfo:window_min = -138.5 ;
> dicominfo:varid = "MNI DICOM information variable" ;
> dicominfo:window_max = 2072.5 ;
> dicominfo:image_type = "DERIVED\\SECONDARY\\OTHER " ;
> int patient ;
> patient:version = "MINC Version 1.0" ;
> patient:full_name = "ABC" ;
> patient:vartype = "group________" ;
> patient:weight = 57. ;
> patient:birthdate = "SA " ;
> patient:position = "HFS " ;
> patient:identification = "ABC" ;
> patient:varid = "MINC standard variable" ;
> int study ;
> study:serial_no = " 9082" ;
> study:station_id = "Anonymized" ;
> study:study_id = "20090324.163029" ;
> study:software_version = "VB33G " ;
> study:version = "MINC Version 1.0" ;
> study:vartype = "group________" ;
> study:calibration_time = "153242.000000 " ;
> study:institution = "Anonymized" ;
> study:modality = "MRI__" ;
> study:start_date = "20090324" ;
> study:device_model = "MAGNETOM EXPERT " ;
> study:field_value = 0.9500702 ;
> study:referring_physician = "Anonymized" ;
> study:varid = "MINC standard variable" ;
> study:calibration_date = "20050304" ;
> study:manufacturer = "SIEMENS " ;
> study:start_time = "163029.686000 " ;
>
> // global attributes:
> :ident =
> "lorisadmin:ipmsa-loris:2020.06.17.13.06.07:29187:1" ;
> :minc_version = "2.4.02" ;
> :history = "Wed Jun 17 13:06:05 2020>>> dcm2mnc Dicom-pdw/
> .\n",
> "" ;
> data:
>
> image-min = 0 ;
>
> image-max = 1991 ;
>
> xspace = 0 ;
>
> yspace = 0 ;
>
> zspace = -74.9935092017673 ;
>
> acquisition = 0 ;
>
> dicom_0x0008 = 0 ;
>
> dicom_0x0009 = 0 ;
>
> dicom_0x0010 = 0 ;
>
> dicom_0x0011 = 0 ;
>
> dicom_0x0018 = 0 ;
>
> dicom_0x0019 = 0 ;
>
> dicom_0x0020 = 0 ;
>
> dicom_0x0021 = 0 ;
>
> dicom_0x0028 = 0 ;
>
> dicom_0x0029 = 0 ;
>
> dicom_0x0051 = 0 ;
>
> dicom_groups = 0 ;
>
> dicominfo = 0 ;
>
> patient = 0 ;
>
> study = 0 ;
> }
> ===
>
> The information in this e-mail is intended only for the person to whom it
> is
> addressed. If you believe this e-mail was sent to you in error and the
> e-mail
> contains patient information, please contact the Partners Compliance
> HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
> error
> but does not contain patient information, please contact the sender and
> properly
> dispose of the e-mail.
> _______________________________________________
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