[Loris-dev] Issue dcm2mnc z_space=1
Morales Pinzon, Alfredo
AMORALESPINZON at bwh.harvard.edu
Wed Jun 17 13:29:17 EDT 2020
Dear LorisDev team,
We are facing an issue with some Dicoms (~400 Dicom studies) being converted to minc files having only one slide (z_space=1) when importing them in LORIS. This issue however seems to be happening in the version 2.3.01 of dcm2mnc used by LORIS:
===
$ dcm2mnc -version
program: 2.3.01 built Jan 17 2018 17:39:49
libminc: 2.4.02
netcdf : 4.5.0 of Jan 17 2018 17:09:58 $
HDF5 : 1.8.20
===
but not in version 2.0.07, which we have in a different environment:
===
$ dcm2mnc -version
program: 2.0.07 built Oct 31 2017 14:03:56
libminc: 2.2.00
netcdf : 4.2.1 of Oct 31 2017 13:59:53 $
HDF5 : 1.8.8
===
I am attaching the output I get when converting a set of Dicoms for one acquisition and also the mncheader of the created file. Do you know why this might be happening? I can share a deidentified testing Dicom if this helps.
Regards,
Alfredo.
Output dcm2mnc:
===
$ dcm2mnc Dicom-pdw/ .
Checking file types...
File Dicom-pdw/000001.dcm appears to be DICOM (CD/Export).
Parsing 60 files |<--------------------------------------------------->|
Sorting 60 files... Done sorting files.
Processing files, one series at a time...
INFO: Number of distinct coordinates: 60
WARNING: Acquisition number is not informative.
WARNING: Image number is a mystery.
WARNING: Minimum image number is 4
WARNING: Temporal position identifier is useless.
INFO: Acquisition number ranges from 1 to 1
INFO: Image number ranges from 4 to 63
INFO: Temporal position id ranges from -1 to -1.
-Parsing series info |<--First Slice at 0,102.006497,0.000000 |
First Echo at 1,0.012000,0.000000
First Time at 4,-61.117167,0.000000
First Phase at 1,0.000000,0.000000
First ChmSh at 1,0.000000,0.000000
Warning: merging extra indices on Time axis: 1 5
->Warning: merging extra indices on Time axis: 1 6
->Warning: merging extra indices on Time axis: 1 7
->Warning: merging extra indices on Time axis: 1 8
->Warning: merging extra indices on Time axis: 1 9
->Warning: merging extra indices on Time axis: 1 10
Warning: merging extra indices on Time axis: 1 11
->Warning: merging extra indices on Time axis: 1 12
->Warning: merging extra indices on Time axis: 1 13
->Warning: merging extra indices on Time axis: 1 14
->Warning: merging extra indices on Time axis: 1 15
->Warning: merging extra indices on Time axis: 1 16
->Warning: merging extra indices on Time axis: 1 17
Warning: merging extra indices on Time axis: 1 18
->Warning: merging extra indices on Time axis: 1 19
->Warning: merging extra indices on Time axis: 1 20
->Warning: merging extra indices on Time axis: 1 21
->Warning: merging extra indices on Time axis: 1 22
->Warning: merging extra indices on Time axis: 1 23
Warning: merging extra indices on Time axis: 1 24
->Warning: merging extra indices on Time axis: 1 25
->Warning: merging extra indices on Time axis: 1 26
->Warning: merging extra indices on Time axis: 1 27
->Warning: merging extra indices on Time axis: 1 28
->Warning: merging extra indices on Time axis: 1 29
->Warning: merging extra indices on Time axis: 1 30
Warning: merging extra indices on Time axis: 1 31
->Warning: merging extra indices on Time axis: 1 32
->Warning: merging extra indices on Time axis: 1 33
->Warning: merging extra indices on Time axis: 1 34
->Warning: merging extra indices on Time axis: 1 35
->Warning: merging extra indices on Time axis: 1 36
Warning: merging extra indices on Time axis: 1 37
->Warning: merging extra indices on Time axis: 1 38
->Warning: merging extra indices on Time axis: 1 39
->Warning: merging extra indices on Time axis: 1 40
->Warning: merging extra indices on Time axis: 1 41
->Warning: merging extra indices on Time axis: 1 42
->Warning: merging extra indices on Time axis: 1 43
Warning: merging extra indices on Time axis: 1 44
->Warning: merging extra indices on Time axis: 1 45
->Warning: merging extra indices on Time axis: 1 46
->Warning: merging extra indices on Time axis: 1 47
->Warning: merging extra indices on Time axis: 1 48
->Warning: merging extra indices on Time axis: 1 49
Warning: merging extra indices on Time axis: 1 50
->Warning: merging extra indices on Time axis: 1 51
->Warning: merging extra indices on Time axis: 1 52
->Warning: merging extra indices on Time axis: 1 53
->Warning: merging extra indices on Time axis: 1 54
->Warning: merging extra indices on Time axis: 1 55
->Warning: merging extra indices on Time axis: 1 56
Warning: merging extra indices on Time axis: 1 57
->Warning: merging extra indices on Time axis: 1 58
->Warning: merging extra indices on Time axis: 1 59
->Warning: merging extra indices on Time axis: 1 60
->Warning: merging extra indices on Time axis: 1 61
->Warning: merging extra indices on Time axis: 1 62
->Warning: merging extra indices on Time axis: 1 63
WARNING: Age was not numeric!!
-Creating minc file |<--------------------------------------------------->|
Done processing files.
===
mnc header
===
$ mincheader abc.mnc
hdf5 abc {
dimensions:
xspace = 256 ;
yspace = 256 ;
zspace = 1 ;
variables:
short image(zspace, yspace, xspace) ;
image:version = "MINC Version 1.0" ;
image:vartype = "group________" ;
image:valid_range = 0., 4095. ;
image:varid = "MINC standard variable" ;
image:complete = "true_" ;
image:dimorder = "zspace,yspace,xspace" ;
image:signtype = "unsigned" ;
double image-min(zspace) ;
image-min:version = "MINC Version 1.0" ;
image-min:vartype = "var_attribute" ;
image-min:varid = "MINC standard variable" ;
image-min:dimorder = "zspace" ;
double image-max(zspace) ;
image-max:version = "MINC Version 1.0" ;
image-max:vartype = "var_attribute" ;
image-max:varid = "MINC standard variable" ;
image-max:dimorder = "zspace" ;
int xspace ;
xspace:version = "MINC Version 1.0" ;
xspace:spacetype = "native____" ;
xspace:vartype = "dimension____" ;
xspace:start = 125. ;
xspace:spacing = "regular__" ;
xspace:alignment = "centre" ;
xspace:direction_cosines = 1., -0., 0. ;
xspace:comments = "X increases from patient left to right" ;
xspace:varid = "MINC standard variable" ;
xspace:length = 256 ;
xspace:step = -0.9765625 ;
int yspace ;
yspace:version = "MINC Version 1.0" ;
yspace:spacetype = "native____" ;
yspace:vartype = "dimension____" ;
yspace:start = 114.989938629699 ;
yspace:spacing = "regular__" ;
yspace:alignment = "centre" ;
yspace:direction_cosines = 0., 0.996194701817766, 0.0871557001590339 ;
yspace:comments = "Y increases from patient posterior to anterior" ;
yspace:varid = "MINC standard variable" ;
yspace:length = 256 ;
yspace:step = -0.9765625 ;
double zspace ;
zspace:version = "MINC Version 1.0" ;
zspace:spacetype = "native____" ;
zspace:vartype = "dimension____" ;
zspace:start = 102.00649652328 ;
zspace:spacing = "regular__" ;
zspace:alignment = "centre" ;
zspace:direction_cosines = -0., -0.0871557001590339, 0.996194701817766 ;
zspace:comments = "Z increases from patient inferior to superior" ;
zspace:varid = "MINC standard variable" ;
zspace:length = 1 ;
zspace:step = 3. ;
int acquisition ;
acquisition:version = "MINC Version 1.0" ;
acquisition:scanning_sequence = "tse1-3" ;
acquisition:percent_phase_fov = 100. ;
acquisition:phase_enc_dir = "ROW " ;
acquisition:acquisition_id = "2" ;
acquisition:vartype = "group________" ;
acquisition:slice_thickness = 3. ;
acquisition:echo_number = 1. ;
acquisition:imaging_frequency = 40461870. ;
acquisition:injection_route = "" ;
acquisition:injection_minute = 0 ;
acquisition:window_width = 309. ;
acquisition:series_time = "163538.580000 " ;
acquisition:mr_acq_type = "2D" ;
acquisition:num_dyn_scans = 1. ;
acquisition:percent_sampling = 100. ;
acquisition:SAR = 0. ;
acquisition:injection_seconds = 0. ;
acquisition:series_description = "pdw " ;
acquisition:echo_train_length = 1. ;
acquisition:repetition_time = 2.76 ;
acquisition:acquisition_time = "163437.462833 " ;
acquisition:comments = "Anonymized" ;
acquisition:image_time = "163939.665000 " ;
acquisition:num_averages = 1. ;
acquisition:imaged_nucleus = "1H" ;
acquisition:flip_angle = 180. ;
acquisition:injection_day = 0 ;
acquisition:tracer = "�����" ;
acquisition:injection_hour = 0 ;
acquisition:injection_year = 0 ;
acquisition:varid = "MINC standard variable" ;
acquisition:injection_volume = 4.94065645841247e-323 ;
acquisition:injection_time = "\b" ;
acquisition:image_type = "DERIVED\\SECONDARY\\OTHER " ;
acquisition:start_time = "20090324 163029.686000 " ;
acquisition:window_center = 131. ;
acquisition:injection_month = 0 ;
acquisition:receive_coil = "CP Head " ;
acquisition:echo_time = 0.012 ;
int dicom_0x0008 ;
dicom_0x0008:el_0x0018 = "1.3.12.2.1107.5.2.2.9082.20090324163538000002004" ;
dicom_0x0008:el_0x0090 = "Anonymized" ;
dicom_0x0008:el_0x1090 = "MAGNETOM EXPERT " ;
dicom_0x0008:el_0x0021 = "20090324" ;
dicom_0x0008:vartype = "group________" ;
dicom_0x0008:el_0x0000 = 524 ;
dicom_0x0008:el_0x1010 = "Anonymized" ;
dicom_0x0008:el_0x0030 = "163029.686000 " ;
dicom_0x0008:el_0x0031 = "163538.580000 " ;
dicom_0x0008:el_0x0020 = "20090324" ;
dicom_0x0008:el_0x103e = "pdw " ;
dicom_0x0008:el_0x0080 = "Anonymized" ;
dicom_0x0008:el_0x0022 = "20090324" ;
dicom_0x0008:el_0x0060 = "MR" ;
dicom_0x0008:el_0x0016 = "1.2.840.10008.5.1.4.1.1.4" ;
dicom_0x0008:el_0x0070 = "SIEMENS " ;
dicom_0x0008:el_0x2111 = "Lossless JPEG compression, selection value 1, point transform 0, compression ratio 1.5987 " ;
dicom_0x0008:el_0x0050 = "Anonymized" ;
dicom_0x0008:varid = "MNI DICOM variable" ;
dicom_0x0008:el_0x0008 = "DERIVED\\SECONDARY\\OTHER " ;
dicom_0x0008:el_0x0005 = "ISO_IR 100" ;
dicom_0x0008:el_0x0023 = "20090324" ;
dicom_0x0008:el_0x0032 = "163437.462833 " ;
dicom_0x0008:el_0x0033 = "163939.665000 " ;
int dicom_0x0009 ;
dicom_0x0009:el_0x0010 = "SPI RELEASE 1 " ;
dicom_0x0009:vartype = "group________" ;
dicom_0x0009:el_0x1210 = "STANDARD" ;
dicom_0x0009:el_0x1227 = "163337.000000 " ;
dicom_0x0009:el_0x0000 = 332 ;
dicom_0x0009:el_0x1010 = "SPI VERSION 01.00 " ;
dicom_0x0009:el_0x1320 = "VC" ;
dicom_0x0009:el_0x0012 = "SIEMENS CM VA0 CMS " ;
dicom_0x0009:el_0x1041 = "MRUPNONE" ;
dicom_0x0009:el_0x1226 = "20090324" ;
dicom_0x0009:el_0x1213 = " 0" ;
dicom_0x0009:el_0x1214 = " 0" ;
dicom_0x0009:el_0x0013 = "SIEMENS CM VA0 LAB " ;
dicom_0x0009:el_0x1015 = "049S01MR012009032416400317" ;
dicom_0x0009:varid = "MNI DICOM variable" ;
dicom_0x0009:el_0x1316 = "728b43ed" ;
dicom_0x0009:el_0x1212 = 0b, 0b, 0b, 0b ;
dicom_0x0009:el_0x1040 = 0b, 0b ;
int dicom_0x0010 ;
dicom_0x0010:el_0x0010 = "ABC" ;
dicom_0x0010:vartype = "group________" ;
dicom_0x0010:el_0x0000 = 154 ;
dicom_0x0010:el_0x1010 = "Anonymized" ;
dicom_0x0010:el_0x0030 = "SA " ;
dicom_0x0010:el_0x1030 = "57" ;
dicom_0x0010:el_0x0040 = "Anonymized" ;
dicom_0x0010:el_0x0020 = "ABC" ;
dicom_0x0010:varid = "MNI DICOM variable" ;
int dicom_0x0011 ;
dicom_0x0011:el_0x0010 = "SPI RELEASE 1 " ;
dicom_0x0011:vartype = "group________" ;
dicom_0x0011:el_0x1123 = " 57" ;
dicom_0x0011:el_0x0000 = 126 ;
dicom_0x0011:el_0x1111 = "163029.686000 " ;
dicom_0x0011:el_0x1110 = "20090324" ;
dicom_0x0011:el_0x0011 = "SIEMENS CM VA0 CMS " ;
dicom_0x0011:varid = "MNI DICOM variable" ;
int dicom_0x0018 ;
dicom_0x0018:el_0x0086 = " 1" ;
dicom_0x0018:el_0x0021 = "NONE" ;
dicom_0x0018:el_0x1020 = "VB33G " ;
dicom_0x0018:el_0x0024 = "tse1-3" ;
dicom_0x0018:vartype = "group________" ;
dicom_0x0018:el_0x5100 = "HFS " ;
dicom_0x0018:el_0x1000 = " 9082" ;
dicom_0x0018:el_0x0000 = 420 ;
dicom_0x0018:el_0x0091 = "1 " ;
dicom_0x0018:el_0x0093 = "100 " ;
dicom_0x0018:el_0x0094 = "100 " ;
dicom_0x0018:el_0x0085 = "1H" ;
dicom_0x0018:el_0x0083 = "1 " ;
dicom_0x0018:el_0x1314 = "180 " ;
dicom_0x0018:el_0x0087 = "0.9500702 " ;
dicom_0x0018:el_0x1201 = "153242.000000 " ;
dicom_0x0018:el_0x0020 = "RM" ;
dicom_0x0018:el_0x0080 = "002.760000E+03" ;
dicom_0x0018:el_0x1312 = "ROW " ;
dicom_0x0018:el_0x0050 = "003.000000E+00" ;
dicom_0x0018:el_0x1310 = 0s, 256s, 252s, 0s ;
dicom_0x0018:varid = "MNI DICOM variable" ;
dicom_0x0018:el_0x1250 = "CP Head " ;
dicom_0x0018:el_0x1316 = "0 " ;
dicom_0x0018:el_0x0023 = "2D" ;
dicom_0x0018:el_0x0081 = "001.200000E+01" ;
dicom_0x0018:el_0x1200 = "20050304" ;
dicom_0x0018:el_0x0025 = "N " ;
dicom_0x0018:el_0x0088 = "0 " ;
dicom_0x0018:el_0x0084 = "004.046187E+01" ;
int dicom_0x0019 ;
dicom_0x0019:el_0x1296 = 1b, 39b, 0b, 0b, 1b, 39b, 0b, 0b, 2b, 0b, 0b, 0b ;
dicom_0x0019:el_0x14d6 = " 0" ;
dicom_0x0019:el_0x14a6 = "001.000000E+02\\04.348140E+00\\04.422564E+00" ;
dicom_0x0019:el_0x1455 = "001.022977E+02" ;
dicom_0x0019:el_0x1482 = "002.000000E+02" ;
dicom_0x0019:el_0x1285 = "NONE " ;
dicom_0x0019:el_0x14a2 = "001.034203E+00" ;
dicom_0x0019:el_0x1245 = " 1" ;
dicom_0x0019:el_0x1422 = "002.700000E+01" ;
dicom_0x0019:el_0x0010 = "SIEMENS CM VA0 CMS " ;
dicom_0x0019:el_0x1020 = "EXAMNONE" ;
dicom_0x0019:vartype = "group________" ;
dicom_0x0019:el_0x14a0 = " 1" ;
dicom_0x0019:el_0x1211 = "002.388881E+02" ;
dicom_0x0019:el_0x1294 = "001.570796E+00" ;
dicom_0x0019:el_0x1471 = "004.698000E+00" ;
dicom_0x0019:el_0x14d3 = "001.000000E+00" ;
dicom_0x0019:el_0x1060 = "131072" ;
dicom_0x0019:el_0x1297 = 64b, 8b, -64b, 1b, -22b, -76b, -1b, -1b ;
dicom_0x0019:el_0x1210 = "002.388881E+02" ;
dicom_0x0019:el_0x1472 = "008.000000E+00" ;
dicom_0x0019:el_0x0000 = 1900 ;
dicom_0x0019:el_0x1231 = " 256" ;
dicom_0x0019:el_0x14da = "PLUSX " ;
dicom_0x0019:el_0x1228 = " -126" ;
dicom_0x0019:el_0x0015 = "SIEMENS CM VA0 ACQU" ;
dicom_0x0019:el_0x1010 = " 50" ;
dicom_0x0019:el_0x14d2 = "NONE" ;
dicom_0x0019:el_0x0012 = "SIEMENS MR VA0 GEN " ;
dicom_0x0019:el_0x1451 = "005.500000E+01" ;
dicom_0x0019:el_0x14a5 = "001.500000E+00\\05.203557E-02\\00.000000E+00" ;
dicom_0x0019:el_0x1230 = " 256" ;
dicom_0x0019:el_0x0014 = "SIEMENS MR VA0 COAD" ;
dicom_0x0019:el_0x1226 = " 125" ;
dicom_0x0019:el_0x1512 = "SIEMENS " ;
dicom_0x0019:el_0x1421 = " 2" ;
dicom_0x0019:el_0x1030 = "A IRS " ;
dicom_0x0019:el_0x1414 = "001.000000E+01" ;
dicom_0x0019:el_0x1213 = "002.000000E+01" ;
dicom_0x0019:el_0x1260 = "001.800000E+02" ;
dicom_0x0019:el_0x1298 = "000.000000E+00\\00.000000E+00\\00.000000E+00" ;
dicom_0x0019:el_0x14d5 = " 0" ;
dicom_0x0019:el_0x1456 = " 25000" ;
dicom_0x0019:el_0x1454 = "-01.000000E+00" ;
dicom_0x0019:el_0x1240 = " 0" ;
dicom_0x0019:el_0x1460 = "006.025031E-01" ;
dicom_0x0019:el_0x1420 = "001.660000E+02" ;
dicom_0x0019:el_0x1470 = "004.698000E+00" ;
dicom_0x0019:el_0x1424 = "003.908454E+01" ;
dicom_0x0019:el_0x1510 = "/usr/appl/proto/014/c/head/LAQ302/PDW_AX.prg" ;
dicom_0x0019:el_0x1290 = " 0" ;
dicom_0x0019:el_0x1480 = "001.430000E+02\\01.570000E+02\\01.450000E+02" ;
dicom_0x0019:el_0x1221 = " 252" ;
dicom_0x0019:el_0x1450 = "008.900000E+01" ;
dicom_0x0019:el_0x1220 = " 252" ;
dicom_0x0019:el_0x1426 = "006.584084E+01" ;
dicom_0x0019:el_0x1214 = " 1" ;
dicom_0x0019:el_0x14d8 = " 129" ;
dicom_0x0019:el_0x1216 = 1b, 1b, 69b, 0b, 64b, 0b, 0b, 0b ;
dicom_0x0019:el_0x1281 = "NONE " ;
dicom_0x0019:el_0x1511 = "/usr/appl/sequence/tse3_12b195.wfc" ;
dicom_0x0019:el_0x1287 = "NONE " ;
dicom_0x0019:el_0x14d4 = " 256" ;
dicom_0x0019:varid = "MNI DICOM variable" ;
dicom_0x0019:el_0x1218 = -67b, -31b, 2b, 54b ;
dicom_0x0019:el_0x1412 = "009.500702E-01" ;
dicom_0x0019:el_0x1250 = " 1" ;
dicom_0x0019:el_0x1452 = "005.500000E+01" ;
dicom_0x0019:el_0x1283 = "NONE " ;
dicom_0x0019:el_0x14b0 = 0b, 0b, 0b, 0b ;
dicom_0x0019:el_0x1270 = " 1" ;
dicom_0x0019:el_0x1212 = "003.979688E-43" ;
dicom_0x0019:el_0x1050 = " 0" ;
dicom_0x0019:el_0x14d7 = " 129" ;
dicom_0x0019:el_0x1513 = "tse1-3" ;
dicom_0x0019:el_0x14d9 = " 1" ;
dicom_0x0019:el_0x14d1 = "000.000000E+00" ;
dicom_0x0019:el_0x1416 = "001.542969E+00\\09.765625E-02" ;
dicom_0x0019:el_0x1462 = "006.281846E-01" ;
int dicom_0x0020 ;
dicom_0x0020:el_0x4000 = "Anonymized" ;
dicom_0x0020:el_0x0010 = "0 " ;
dicom_0x0020:vartype = "group________" ;
dicom_0x0020:el_0x000d = "1.3.12.2.1107.5.2.2.9082.20090324163029000" ;
dicom_0x0020:el_0x0000 = 526 ;
dicom_0x0020:el_0x0012 = " 1" ;
dicom_0x0020:el_0x1041 = "-01.020065E+02" ;
dicom_0x0020:el_0x0030 = "-01.245117E+02\\-1.051755E+02\\01.115978E+02" ;
dicom_0x0020:el_0x1001 = " 1" ;
dicom_0x0020:el_0x0013 = " 4" ;
dicom_0x0020:el_0x000e = "1.3.12.2.1107.5.2.2.9082.20090324163538000002" ;
dicom_0x0020:el_0x0011 = " 2" ;
dicom_0x0020:el_0x0070 = "PLANAR" ;
dicom_0x0020:el_0x0050 = "-01.020065E+02" ;
dicom_0x0020:varid = "MNI DICOM variable" ;
dicom_0x0020:el_0x0052 = "1.3.12.2.1107.5.2.2.9082.20090324163337000" ;
dicom_0x0020:el_0x0032 = "-125\\-105.66192\\111.64036 " ;
dicom_0x0020:el_0x0035 = "001.000000E+00\\-0.000000E+00\\-0.000000E+00\\00.000000E+00\\09.961947E-01\\-8.715570E-02" ;
dicom_0x0020:el_0x0037 = "1\\-0\\-0\\0\\0.9961947\\-0.0871557" ;
int dicom_0x0021 ;
dicom_0x0021:el_0x1163 = "-01.020065E+02" ;
dicom_0x0021:el_0x1124 = "000.000000E+00\\00.000000E+00" ;
dicom_0x0021:el_0x1331 = " 0" ;
dicom_0x0021:el_0x0010 = "SIEMENS MED " ;
dicom_0x0021:el_0x1020 = 0b, 0b ;
dicom_0x0021:el_0x1120 = "002.500000E+02\\02.500000E+02" ;
dicom_0x0021:vartype = "group________" ;
dicom_0x0021:el_0x1130 = "HEAD" ;
dicom_0x0021:el_0x1344 = "000.000000E+00" ;
dicom_0x0021:el_0x1322 = " 0" ;
dicom_0x0021:el_0x1170 = "R \\AH\\HP " ;
dicom_0x0021:el_0x2308 = "000.000000E+00\\00.000000E+00\\00.000000E+00" ;
dicom_0x0021:el_0x2304 = "000.000000E+00\\00.000000E+00\\00.000000E+00" ;
dicom_0x0021:el_0x0000 = 1512 ;
dicom_0x0021:el_0x1342 = " 1" ;
dicom_0x0021:el_0x2303 = "002.500000E+04" ;
dicom_0x0021:el_0x2309 = "000.000000E+00" ;
dicom_0x0021:el_0x1334 = " 0" ;
dicom_0x0021:el_0x1182 = "MEA " ;
dicom_0x0021:el_0x1341 = " 60" ;
dicom_0x0021:el_0x116b = "000.000000E+00\\-9.961947E-01\\08.715570E-02" ;
dicom_0x0021:el_0x2300 = "IMAG" ;
dicom_0x0021:el_0x2310 = "004.095000E+03" ;
dicom_0x0021:el_0x1370 = " 1" ;
dicom_0x0021:el_0x1350 = 0b, 0b, 0b, 0b ;
dicom_0x0021:el_0x1126 = " 0" ;
dicom_0x0021:el_0x2331 = "005.500000E+01\\05.500000E+01\\05.500000E+01\\05.500000E+01\\05.500000E+01\\05.500000E+01\\05.500000E+01\\05.500000E+01\\05.500000E+01\\05.500000E+01\\05.500000E+01\\05.500000E+01\\05.500000E+01\\05.500000E+01\\05.500000E+01\\05.500000E+01" ;
dicom_0x0021:el_0x2305 = "000.000000E+00\\00.000000E+00\\00.000000E+00" ;
dicom_0x0021:el_0x1165 = 5b, 0b ;
dicom_0x0021:el_0x1356 = "002.760000E+03" ;
dicom_0x0021:el_0x2301 = " 256" ;
dicom_0x0021:el_0x116a = "001.000000E+00\\00.000000E+00\\00.000000E+00" ;
dicom_0x0021:el_0x1324 = " 0" ;
dicom_0x0021:el_0x1160 = "000.000000E+00\\-1.886242E+01\\-1.007459E+02" ;
dicom_0x0021:el_0x2307 = " 252\\ 256\\ 0" ;
dicom_0x0021:el_0x0013 = "SIEMENS MR VA0 GEN " ;
dicom_0x0021:el_0x1161 = "-00.000000E+00\\08.715570E-02\\09.961947E-01" ;
dicom_0x0021:el_0x1171 = "L \\PF\\FA " ;
dicom_0x0021:el_0x0011 = "SIEMENS CM VA0 CMS " ;
dicom_0x0021:el_0x1330 = " 0" ;
dicom_0x0021:el_0x2306 = " 252\\ 256\\ 0" ;
dicom_0x0021:el_0x1132 = "HEAD" ;
dicom_0x0021:el_0x1339 = "003.000000E+00" ;
dicom_0x0021:varid = "MNI DICOM variable" ;
dicom_0x0021:el_0x0023 = "SIEMENS MR VA0 RAW " ;
dicom_0x0021:el_0x1340 = " 60" ;
dicom_0x0021:el_0x2302 = " 256" ;
dicom_0x0021:el_0x1122 = "001.000000E+00" ;
dicom_0x0021:el_0x1343 = " 1" ;
dicom_0x0021:el_0x134f = "INTERLEAVED " ;
int dicom_0x0028 ;
dicom_0x0028:el_0x0010 = 256s ;
dicom_0x0028:vartype = "group________" ;
dicom_0x0028:el_0x0004 = "MONOCHROME2 " ;
dicom_0x0028:el_0x0103 = 0s ;
dicom_0x0028:el_0x0000 = 184 ;
dicom_0x0028:el_0x0100 = 16s ;
dicom_0x0028:el_0x0102 = 11s ;
dicom_0x0028:el_0x0030 = "009.765625E-01\\09.765625E-01" ;
dicom_0x0028:el_0x0200 = 32736s ;
dicom_0x0028:el_0x0040 = "RECT" ;
dicom_0x0028:el_0x0011 = 256s ;
dicom_0x0028:varid = "MNI DICOM variable" ;
dicom_0x0028:el_0x0101 = 12s ;
dicom_0x0028:el_0x1050 = "131\\ 131 " ;
dicom_0x0028:el_0x1051 = "309\\ 309 " ;
dicom_0x0028:el_0x0002 = 1s ;
int dicom_0x0029 ;
dicom_0x0029:el_0x1120 = "Anonymized" ;
dicom_0x0029:vartype = "group________" ;
dicom_0x0029:el_0x0000 = 92 ;
dicom_0x0029:el_0x1110 = "STD 1 " ;
dicom_0x0029:el_0x1152 = " 1" ;
dicom_0x0029:el_0x0011 = "SIEMENS CM VA0 CMS " ;
dicom_0x0029:varid = "MNI DICOM variable" ;
int dicom_0x0051 ;
dicom_0x0051:el_0x0010 = "SIEMENS CM VA0 CMS " ;
dicom_0x0051:vartype = "group________" ;
dicom_0x0051:el_0x0000 = 366 ;
dicom_0x0051:el_0x1010 = "CDE\\F 59Y\\H-SP-CR\\IMAGE 4\\\\24-MAR-2009\\16:35\\TA 03:58\\AC 1\\\\\\CTO,, C\\VB33G\\ 252 *256 s\\tse1-3 180\\SCAN 1\\TR 2760.0\\TE 12.0/1\\\\?\\?\\SL 3.0\\SP -102.0\\Tra>Cor -5\\\\FoV 250*250\\?\\?\\TP 0\\?\\?\\?\\?\\SER 1-2\\\\01-JAN-1900\\*\\\\STU/IMA 2/4\\\\MAGNETOM EXPERT\\ABC\\16:35:39 " ;
dicom_0x0051:varid = "MNI DICOM variable" ;
int dicom_groups ;
dicom_groups:vartype = "group________" ;
dicom_groups:varid = "MNI DICOM variable" ;
int dicominfo ;
dicominfo:vartype = "group________" ;
dicominfo:window_min = -138.5 ;
dicominfo:varid = "MNI DICOM information variable" ;
dicominfo:window_max = 2072.5 ;
dicominfo:image_type = "DERIVED\\SECONDARY\\OTHER " ;
int patient ;
patient:version = "MINC Version 1.0" ;
patient:full_name = "ABC" ;
patient:vartype = "group________" ;
patient:weight = 57. ;
patient:birthdate = "SA " ;
patient:position = "HFS " ;
patient:identification = "ABC" ;
patient:varid = "MINC standard variable" ;
int study ;
study:serial_no = " 9082" ;
study:station_id = "Anonymized" ;
study:study_id = "20090324.163029" ;
study:software_version = "VB33G " ;
study:version = "MINC Version 1.0" ;
study:vartype = "group________" ;
study:calibration_time = "153242.000000 " ;
study:institution = "Anonymized" ;
study:modality = "MRI__" ;
study:start_date = "20090324" ;
study:device_model = "MAGNETOM EXPERT " ;
study:field_value = 0.9500702 ;
study:referring_physician = "Anonymized" ;
study:varid = "MINC standard variable" ;
study:calibration_date = "20050304" ;
study:manufacturer = "SIEMENS " ;
study:start_time = "163029.686000 " ;
// global attributes:
:ident = "lorisadmin:ipmsa-loris:2020.06.17.13.06.07:29187:1" ;
:minc_version = "2.4.02" ;
:history = "Wed Jun 17 13:06:05 2020>>> dcm2mnc Dicom-pdw/ .\n",
"" ;
data:
image-min = 0 ;
image-max = 1991 ;
xspace = 0 ;
yspace = 0 ;
zspace = -74.9935092017673 ;
acquisition = 0 ;
dicom_0x0008 = 0 ;
dicom_0x0009 = 0 ;
dicom_0x0010 = 0 ;
dicom_0x0011 = 0 ;
dicom_0x0018 = 0 ;
dicom_0x0019 = 0 ;
dicom_0x0020 = 0 ;
dicom_0x0021 = 0 ;
dicom_0x0028 = 0 ;
dicom_0x0029 = 0 ;
dicom_0x0051 = 0 ;
dicom_groups = 0 ;
dicominfo = 0 ;
patient = 0 ;
study = 0 ;
}
===
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