[Loris-dev] loris server
Melanie Legault, Mrs
melanie.legault2 at mcgill.ca
Thu Nov 7 07:33:56 EST 2019
Hello,
Changing the project name in the configuration page (https://loris.url/configuration/) of LORIS, only change the title of the project. To see this change, you have to log out of LORIS and then go back to the login page (https://.loris.url/). This is the only place you can find the project name (except from the configuration page). See ProjectName.png
As for files permission, I would suggest a few change to improve security of you server. Some extra permissions where granted to help you but are not needed.
* /srv/www/loris/smarty/templates_c/ should have ownership of lorisadmin:httpd and permission 770 (or 775)
* srv/www/loris/project/ should have ownership lorisadmin:httpd and permission 770 (775)
* All other files under loris should have lorisadmin:lorisadmin 755
Reading through this change of mail, I understand that you let Apache store file in /srv/www/loris
| 31 | DownloadPath | Downloads | /srv/www/loris/ | Where
>> files are downloaded
Downloaded files should not be in the same tree as LORIS code. It should be in a separate structure where Apache will not try and do not have permission (in httpd.conf) to execute files.
Kind regards,
Mélanie Legault | Software developer | Faculty of Medicine | McGill University
3801 University, Montréal, QC H3A 2B4
________________________________
From: loris-dev-bounces at bic.mni.mcgill.ca <loris-dev-bounces at bic.mni.mcgill.ca> on behalf of Ioannis Pappas <ioannis at berkeley.edu>
Sent: November 7, 2019 0:18
To: loris-dev at bic.mni.mcgill.ca <loris-dev at bic.mni.mcgill.ca>
Cc: Julie Ashworth, HWNI Computing Support <support-cirl at berkeley.edu>; Christine Rogers, Ms. <christine.rogers at mcgill.ca>
Subject: Re: [Loris-dev] loris server
Hi Christine and Julie.
Yes it looks like that any attempt to configure something in the front-end results in the same page. I am sending this to the list (as you requested Christine) alongside the troubleshooting and discussion so far with Julie.
Best wishes,
Ioannis
> On Nov 6, 2019, at 7:03 PM, Julie Ashworth, HWNI Computing Support <support-cirl at berkeley.edu> wrote:
>
> hi Christine and Ioannis,
> Ioannis, can you follow-up with Christine about using the front-end?
>
> We're using CentOS7.7 and loris-21.0.1.
>
> I confirmed that I could login as the mysql user (lorismyqsl) and change the 'url' config setting from 'http://loris.priv' to 'http://localhost', and back again.
>
> MariaDB [loris_database]> SELECT c.ConfigID, cs.Name, cs.Label, c.Value, cs.Description FROM Config c LEFT JOIN ConfigSettings cs ON (c.ConfigID = cs.ID) JOIN ConfigSettings csp ON (cs.Parent = csp.ID) WHERE csp.Name = 'www';
> +----------+-------------------+-------------------+-------------------+--------------------------------------+
> | ConfigID | Name | Label | Value | Description |
> +----------+-------------------+-------------------+-------------------+--------------------------------------+
> | 44 | host | Host | loris.priv | Host |
> | 45 | url | Main LORIS URL | http://loris.priv | Main URL where LORIS can be accessed |
> | 46 | issue_tracker_url | Issue tracker URL | /issue_tracker | The *new* bug/issue tracker url |
> +----------+-------------------+-------------------+-------------------+--------------------------------------+
>
> MariaDB [loris_database]> UPDATE Config SET Value='http://localhost' WHERE ConfigID=(SELECT ID FROM ConfigSettings WHERE Name='url');
> Rows matched: 1 Changed: 1 Warnings: 0
>
> MariaDB [loris_database]> SELECT c.ConfigID, cs.Name, cs.Label, c.Value, cs.Description FROM Config c LEFT JOIN ConfigSettings cs ON (c.ConfigID = cs.ID) JOIN ConfigSettings csp ON (cs.Parent = csp.ID) WHERE csp.Name = 'www';
> +----------+-------------------+-------------------+------------------+--------------------------------------+
> | ConfigID | Name | Label | Value | Description |
> +----------+-------------------+-------------------+------------------+--------------------------------------+
> | 44 | host | Host | loris.priv | Host |
> | 45 | url | Main LORIS URL | http://localhost | Main URL where LORIS can be accessed |
> | 46 | issue_tracker_url | Issue tracker URL | /issue_tracker | The *new* bug/issue tracker url |
> +----------+-------------------+-------------------+------------------+--------------------------------------+
> 3 rows in set (0.00 sec)
>
> best,
> Julie
>
>
> On 06-11-2019 21.43 +0000, Christine Rogers, Ms. wrote:
>> Hi Julie,
>> Forgive my ambiguity - We run the community support listserv for
>> developers, project administrators and sysadmins setting up LORIS, so that
>> these users can contact our technical team for exactly such technical
>> help.
>> If it's ok with you, I'd encourage you subscribe to the listserv and
>> contact our technical team that way for the same reason.
>> (Note that front-end users of LORIS typically contact their project team
>> for support, rather than us.)
>> Given that your lorismysql user privileges seem appropriate ('UPDATE" is
>> there, I mistyped 'INSERT" before)
>> -- is there any other indication why the database record is not
>> updating?
>> In the front-end, can your 'admin' user effect any changes in (any) Config
>> setting?
>> In the back-end, when you tried updating a field using your
>> lorismysql credential, what happened?
>> Your front end is loading ok, and you can log in there, if I understood
>> correctly.
>> Thanks for letting us know these details at
>> [1]loris-dev at bic.mni.mcgill.ca
>> Please also include what version of LORIS you are installing, and on what
>> OS version.
>> Best,
>> Christine
>> On Wed, Nov 6, 2019 at 3:31 PM Julie Ashworth, HWNI Computing Support
>> <[2]support-cirl at berkeley.edu> wrote:
>>
>> Thank you Christine,
>> I'm the linux sysadmin who installed the loris database for Ioannis.
>> I'm not a loris user, however, so that makes it a little awkward for
>> troubleshooting via the mailing list. I'm happy to help in whatever way
>> I can.
>>
>> Regarding the database permissions, I ran:
>>
>> MariaDB [(none)]> show grants for 'lorismysql'@'%';
>> +--------------------------------------------------------------------------------+
>> | Grants for lorismysql@%
>> |
>> +--------------------------------------------------------------------------------+
>> | GRANT USAGE ON *.* TO 'lorismysql'@'%'
>> |
>> | GRANT SELECT, INSERT, UPDATE, DELETE ON `loris_database`.* TO
>> 'lorismysql'@'%' |
>> +--------------------------------------------------------------------------------+
>> 2 rows in set (0.00 sec)
>>
>> looking at the 'tips' section in the page you referred to...
>>
>> | 29 | base | Base | /srv/www/loris/ | The base
>> filesystem path where LORIS is installed |
>> | 31 | DownloadPath | Downloads | /srv/www/loris/ | Where
>> files are downloaded
>>
>> +----------+-------------------+-------------------+-------------------+--------------------------------------+
>> | ConfigID | Name | Label | Value |
>> Description |
>> +----------+-------------------+-------------------+-------------------+--------------------------------------+
>> | 44 | host | Host | loris.priv |
>> Host |
>> | 45 | url | Main LORIS URL |
>> [3]http://loris.priv | Main URL where LORIS can be accessed |
>> | 46 | issue_tracker_url | Issue tracker URL | /issue_tracker |
>> The *new* bug/issue tracker url |
>> +----------+-------------------+-------------------+-------------------+--------------------------------------+
>>
>> apache config:
>>
>> Listen 80
>> User apache
>> Group apache
>> DocumentRoot "/srv/www/loris/htdocs"
>>
>> <Directory />
>> AllowOverride none
>> Require all denied
>> </Directory>
>>
>> <Directory "/srv/www">
>> AllowOverride All
>> Options Indexes FollowSymLinks
>> Require all granted
>> </Directory>
>>
>> <Directory "/srv/www/loris/htdocs">
>> Options Indexes FollowSymLinks
>> AllowOverride All
>> Require all granted
>> </Directory>
>>
>> file permissions:
>>
>> # ls -ld /srv/www/loris/smarty/templates_c
>> drwxrwxrwx 2 lorisadmin lorisadmin 4096 Oct 31 09:46
>> /srv/www/loris/smarty/templates_c/
>>
>> [root at loris loris]# ls -l /srv/www/loris/smarty/templates_c
>> -rw-r--r-- 1 lorisadmin lorisadmin 2444 Oct 31 09:46
>> 0e1b94643329544102d69ebd990c8b0165d1bd0d_0.file.form_passwordexpiry.tpl.php
>> -rw-r--r-- 1 lorisadmin lorisadmin 10490 Sep 10 10:55
>> 195463768851669204bf65105fe4e81a03455b48_0.file.form_data_team_helper.tpl.php
>> -rw-r--r-- 1 lorisadmin lorisadmin 21126 Sep 7 18:39
>> 1ebadd1dabd19543319b9015a275a25fb3ea1271_0.file.main.tpl.php
>> -rw-r--r-- 1 lorisadmin lorisadmin 3296 Sep 7 18:35
>> 32a6e0e3cc0aee3715361b33919eac95c0bb9cdc_0.file.form_login.tpl.php
>> -rw-r--r-- 1 lorisadmin lorisadmin 5901 Sep 7 21:10
>> 5cdeb715e5ad48d381bf4ea25405f9bfe5b81533_0.file.form_my_preferences.tpl.php
>> -rw-r--r-- 1 lorisadmin lorisadmin 23339 Sep 7 18:39
>> 71d07644a1309b40189d42145f7042af6743e856_0.file.form_dashboard.tpl.php
>> -rw-r--r-- 1 lorisadmin lorisadmin 874 Sep 10 11:01
>> 82495f3f78d11898c2eb816f93ec7338caa5ca28_0.file.500.tpl.php
>> -rw-r--r-- 1 lorisadmin lorisadmin 1101 Sep 10 10:58
>> 981927c886552e58e58f493e3153d095d2fe5d66_0.file.form_instrument_builder.tpl.php
>> -rw-r--r-- 1 lorisadmin lorisadmin 18054 Sep 10 10:59
>> 9dc62269f6e5525550f5928a805017c5e110a582_0.file.menu_data_release.tpl.php
>> -rw-r--r-- 1 lorisadmin lorisadmin 3590 Sep 7 18:39
>> a03bc16552e4c92f220889e46134f8fe96caf2ea_0.file.progress_bar.tpl.php
>> -rw-r--r-- 1 lorisadmin lorisadmin 25141 Sep 7 21:08
>> a07d2701a4cda44e7ef7f6025b78e76f7b6e65c4_0.file.form_configuration.tpl.php
>> -rw-r--r-- 1 lorisadmin lorisadmin 897 Sep 7 18:35
>> a0b6f32d181ed65d471eea20abc4abbc40bf3469_0.file.404.tpl.php
>> -rw-r--r-- 1 lorisadmin lorisadmin 9210 Sep 10 11:01
>> a1c292c69532174e9aa753a48e112d4b0eb33594_0.file.menu_mri_violations.tpl.php
>> -rw-r--r-- 1 lorisadmin lorisadmin 8917 Sep 10 13:21
>> ae14f13d831988de3500d7174b53a47390649eb5_0.file.form_project.tpl.php
>> -rw-r--r-- 1 lorisadmin lorisadmin 4811 Sep 7 18:35
>> d1ca754a8d9c5ab253e43310722bf6504c17d6e1_0.file.public_layout.tpl.php
>> -rw-r--r-- 1 lorisadmin lorisadmin 3309 Sep 10 11:02
>> d8ced7af9adee12c690eb2cc0d3ad5dc4ff54d10_0.file.form_statistics.tpl.php
>> -rw-r--r-- 1 lorisadmin lorisadmin 10303 Sep 10 10:59
>> e6424ba9933db2e98436eb3df00ea38ae63d7b18_0.file.menu_genomic_browser.tpl.php
>> -rw-r--r-- 1 lorisadmin lorisadmin 12273 Sep 7 17:42
>> fb872a21af70c86930fd51b0f25275c1e0912249_0.file.install.tpl.php
>>
>> thanks again!
>> Julie
>>
>> On 06-11-2019 19.01 +0000, Christine Rogers, Ms. wrote:
>>> Hi Ioannis,Â
>>> Thanks for your question.Â
>>> Given that the URL field is not updating, I suspect it's a database
>>> back-end issue.Â
>>> Can you verify -- Has your mysql user lorismysql been granted the
>> "INSERT"
>>> privilege for the right database? If not, that would result in an
>> error
>>> like the kind you are seeing.Â
>>> Also, if you wish to check your LORIS Configuration settings in the
>>> backend database such as the URL field -- to see what was actually
>> stored
>>> in a given database field and should display in the Config
>> module:Â
>>> You can run the queries listed in the "Troubleshooting
>> Configuration
>>> settings" section of our Github-wiki Setup Guide (under Project
>>> Customization) :Â
>>>
>> [1][4]https://github.com/aces/Loris/wiki/Project-Customization#troubleshooting-configuration-settings
>>> Lastly, this question is perfectly appropriate for the loris-dev
>> community
>>> support listserv -- please [2]subscribe here and then email our
>> technical
>>> team your next question at [3][5]loris-dev at bic.mni.mcgill.ca
>> (after checking
>>> any forwarded threads for sensitive info).Â
>>> We prefer to answer technical questions there for the benefit of
>> the
>>> community and other first-time users in the same position as
>> yourself. Â
>>> Thanks and cheers,Â
>>> ChristineÂ
>>> On Mon, Nov 4, 2019 at 5:49 PM Dr. Ioannis Pappas PhD
>>> <[4][6]ioannis at berkeley.edu> wrote:
>>>
>>> Hi Loris support.Â
>>> My name is ioannis Pappas, a post-doc at the D'Esposito lab
>> stroke group
>>> at UC Berkeley. With the kind of help of our sys admin Julie
>> (cc'ed) we
>>> have set up our loris database in our cluster (she is the sudo
>> user and
>>> I am the admin user).
>>> If you allow me, I would like to ask you about the first
>> configuration
>>> steps in the front end as they are described in the tutorial. We
>> can
>>> login to [5][7]http://loris and the front end normally.
>>> However any update that I am trying to perform in
>> Admin->Configuration
>>> doesn't work (e.g. updating the study name). It just refreshes
>> the same
>>> page. I am just wondering if there is an issue with writing in
>> the
>>> configuration file.
>>> Here are the permissions setup for where Loris is installed.
>>> chmod 777 /var/www/loris/smarty/templates_c
>>> cd /srv/www/loris
>>> chown -R lorisadmin:lorisadmin .
>>> chmod -c -R a+r .
>>> Â Â this command gives everyone read access, and outputs what
>> changes
>>> were made:
>>>   mode of ¿./project¿ changed from 0770 (rwxrwx---) to 0774
>>> (rwxrwxr--)
>>>   mode of ¿./tools/logs¿ changed from 0770 (rwxrwx---) to
>> 0774
>>> (rwxrwxr--)
>>> find . -type d -exec chmod a+x -c {} \;
>>> Â Â this command gives everyone permission to open a directory,
>> and
>>> outputs what changes were made:
>>>   mode of ¿./project¿ changed from 0774 (rwxrwxr--) to 0775
>>> (rwxrwxr-x)
>>>   mode of ¿./tools/logs¿ changed from 0774 (rwxrwxr--) to
>> 0775
>>> (rwxrwxr-x)
>>> Hopefully you can help me with this. I also subscribed to the
>> mailing
>>> list but I am not sure if this too much of a basic question for
>> the
>>> list.
>>> Best wishes,
>>> Ioannis
>>> On Mon, Nov 4, 2019 at 1:12 PM Julie Ashworth, HWNI Computing
>> Support
>>> <[6][8]support-cirl at berkeley.edu> wrote:
>>>
>>> Hi ioannis, maybe it's best to ask the developers? You can cc
>> me if
>>> you'd like.
>>> On Mon, Nov 4, 2019, 12:37 PM Ioannis Pappas
>> <[7][9]ioannis at berkeley.edu>
>>> wrote:
>>>
>>> That did the trick Julie. Thank you!
>>>
>>> I am still trying to understand how configuration works
>> though. For
>>> example if I just try to change the name of the
>>> study from the front end, I get nowhere (it just refreshes
>> the same
>>> page).
>>>
>>> I am not sure if this requires write permissions somewhere in
>> a
>>> config file/folder and that’s why it doesn’t update it.
>>>
>>> Best wishes,
>>> Ioannis
>>>
>>> > On Nov 4, 2019, at 12:08 PM, Julie Ashworth, HWNI Computing
>>> Support <[8][10]support-cirl at berkeley.edu> wrote:
>>> >
>>> > just in case you're interested, these are the permission
>> changes I
>>> made:
>>> >
>>> > chmod 777 /var/www/loris/smarty/templates_c
>>> > cd /srv/www/loris
>>> > chown -R lorisadmin:lorisadmin .
>>> > chmod -c -R a+r .
>>> >Â Â this command gives everyone read access, and outputs
>> what
>>> changes were made:
>>> >  mode of ¿./project¿ changed from 0770 (rwxrwx---) to
>> 0774
>>> (rwxrwxr--)
>>> >  mode of ¿./tools/logs¿ changed from 0770 (rwxrwx---)
>> to 0774
>>> (rwxrwxr--)
>>> > find . -type d -exec chmod a+x -c {} \;
>>> >Â Â this command gives everyone permission to open a
>> directory, and
>>> outputs what changes were made:
>>> >  mode of ¿./project¿ changed from 0774 (rwxrwxr--) to
>> 0775
>>> (rwxrwxr-x)
>>> >  mode of ¿./tools/logs¿ changed from 0774 (rwxrwxr--)
>> to 0775
>>> (rwxrwxr-x)
>>> >
>>> >
>>> >
>>> > On 04-11-2019 12.03 -0800, Ioannis Pappas wrote:
>>> >> Hi Julie.
>>> >> I just tried and I still don???t get anything. I also
>> tried
>>> private mode in Firefox in case the empty page was cached.
>>> >> Sorry for this.
>>> >>
>>> >> Best wishes,
>>> >> Ioannis
>>> >>
>>> >>> On Nov 4, 2019, at 11:58 AM, Julie Ashworth, HWNI
>> Computing
>>> Support <[9][11]support-cirl at berkeley.edu> wrote:
>>> >>>
>>> >>> hi Ioannis,
>>> >>> no worries, I changed the following directory to 777:
>>> >>>
>>> >>> /var/www/loris/smarty/templates_c
>>> >>>
>>> >>> will you please check if that works?
>>> >>>
>>> >>> thanks!
>>> >>>
>>> >>>
>>> >>>
>>> >>>
>>> >>>
>>> >>> On 04-11-2019 11.49 -0800, Dr. Ioannis Pappas PhD wrote:
>>> >>>>Â Hi Julie.
>>> >>>>Â Apologies for bugging you with this again. We tried
>> now to
>>> >>>> access [1][10][12]http://lorisÂ
>>> >>>> and we are getting a blank page. I think the reason
>> for this
>>> is that we
>>> >>>> don't have read permissions to read from the
>> template located
>>> in
>>> >>>>Â /var/www/loris/smarty See here bottom of the
>>> >>>> pageÂ
>>>
>> [2][11][13]https://github.com/aces/Loris/wiki/Installing-Loris-in-Brief
>>> >>>>Â I think, in general, I am a little bit confused as to
>> what the
>>> permissions
>>> >>>>Â should be for us that are not sudos. My understanding
>> is that
>>> if we don't
>>> >>>>Â have read or write permissions then we can't access or
>> write
>>> to
>>> >>>>Â /var/www/loris, meaning that we can't access or
>> configure.
>>> Should
>>> >>>> everything be chmod 777 for example?Â
>>> >>>>Â Thank you very much once again.
>>> >>>>Â Best wishes,
>>> >>>>Â Ioannis
>>> >>>>Â On Thu, Oct 31, 2019 at 1:56 PM Dr. Ioannis Pappas PhD
>>> >>>>Â <[3][12][14]ioannis at berkeley.edu> wrote:
>>> >>>>
>>> >>>>Â Â Thank you very much Julie. I appreciate this and I
>> will dig
>>> into Loris
>>> >>>>Â Â given your changes. Thank you so much for your
>> help.
>>> >>>>Â Â Best wishes,
>>> >>>>Â Â Ioannis
>>> >>>>Â Â On Thu, Oct 31, 2019 at 12:48 PM Julie Ashworth,
>> HWNI
>>> Computing Support
>>> >>>>Â Â <[4][13][15]support-cirl at berkeley.edu> wrote:
>>> >>>>
>>> >>>>Â Â Â hi Ioannis,
>>> >>>>
>>> >>>>Â Â Â 1. I changed the permissions of /srv/www/loris
>> to be owned
>>> by
>>> >>>>Â Â Â lorisadmin. I reivewed my installation notes,
>> and I did
>>> this already
>>> >>>>Â Â Â when
>>> >>>>Â Â Â I installed the server. I'm not sure why they
>> changed, so
>>> it's
>>> >>>>Â Â Â probably a
>>> >>>>Â Â Â good idea to keep an eye on that.
>>> >>>>
>>> >>>>Â Â Â 2. When I installed the loris software, I also
>> installed a
>>> mysql
>>> >>>>Â Â Â database as recommended in the instructions:
>>> >>>>
>>> >>>>Â Â Â projectname: LORIS
>>> >>>>Â Â Â databasename: loris_database
>>> >>>>Â Â Â mysqluser: lorismysql
>>> >>>>Â Â Â frontend: lorisweb
>>> >>>>
>>> >>>>Â Â Â 3. A couple of weeks ago, I moved Henrik's home
>> directory
>>> to
>>> >>>>Â Â Â /home/despoA,
>>> >>>>Â Â Â but I forgot to update loris. This is done now.
>>> >>>>
>>> >>>>Â Â Â best,
>>> >>>>Â Â Â Julie
>>> >>>>
>>> >>>>Â Â Â On 31-10-2019 11.15 -0700, Dr. Ioannis Pappas
>> PhD wrote:
>>> >>>>>   Hi Julie.
>>> >>>>>   I hope you are well. We are trying to
>> configure loris
>>> that you
>>> >>>>Â Â Â kindly set
>>> >>>>>   up for us.
>>> >>>>>   I have a couple of questions for you if you
>> allow me
>>> so.Â
>>> >>>>>   1) First, although we are logging into the
>> front end
>>> with admin
>>> >>>>Â Â Â username
>>> >>>>>   (lorisweb) and password, it seems that any
>> kind of
>>> update of
>>> >>>>Â Â Â configuration
>>> >>>>>   we are trying to do fails (meaning that if
>> we, say,
>>> change the
>>> >>>>Â Â Â name of the
>>> >>>>>   study and press "submit", this doesn't do
>> anything-it
>>> doesn't
>>> >>>>Â Â Â update).
>>> >>>>>   It's almost like our lorisweb user doesn't
>> have write
>>> privileges
>>> >>>>Â Â Â in the
>>> >>>>>   /var/www/loris/project (where I think every
>>> configuration should
>>> >>>>Â Â Â be).
>>> >>>>>   This generalizes for everything that we are
>> trying to do
>>> in the
>>> >>>>Â Â Â front end.
>>> >>>>>   Clicking any instrument/tab in the front end
>> doesn't
>>> really point
>>> >>>>Â Â Â to
>>> >>>>>   anything.Â
>>> >>>>>   2) Loris suggest doing configurations via
>> SQL. Is it
>>> possible to
>>> >>>>Â Â Â run SQL
>>> >>>>>   scripts in the backend
>>> >>>>>   3) For some reason typing ssh lors for Henrik
>> doesn't
>>> directly
>>> >>>>Â Â Â take him to
>>> >>>>>   loris (it requires a password that is not the
>> password
>>> setup for
>>> >>>>Â Â Â the
>>> >>>>>   lorisweb user). Will you be able to fix this
>> via your
>>> sudo
>>> >>>>Â Â Â privileges?
>>> >>>>>   Thank you very much in advance for all your
>> help Julie.
>>> Let us
>>> >>>>Â Â Â know if
>>> >>>>>   this is something that shouldn't be directed
>> to you (but
>>> instead
>>> >>>>Â Â Â to the
>>> >>>>>   loris people).Â
>>> >>>>>   Best wishes,
>>> >>>>>   Ioannis
>>> >>>>>   On Mon, Sep 9, 2019 at 6:25 PM Julie
>> Ashworth, HWNI
>>> Computing
>>> >>>>Â Â Â Support
>>> >>>>>   <[1][5][14][16]support-cirl at berkeley.edu>
>> wrote:
>>> >>>>>
>>> >>>>>    hi Henrik and Ioannis,
>>> >>>>>    the loris server is available for you to
>> use.
>>> >>>>>
>>> >>>>>    The servername is 'loris'. I created a
>> directory
>>> called
>>> >>>>Â Â Â /data/loris for
>>> >>>>>    you to store data. You may create new
>> folders in
>>> /data/loris to
>>> >>>>Â Â Â organize
>>> >>>>>    your data.
>>> >>>>>
>>> >>>>>    1) secure shell or secure copy:
>>> >>>>>    You can log in with the 'ssh' or 'scp'
>> command from
>>> your remote
>>> >>>>Â Â Â desktop
>>> >>>>>    session. You don't need to authenticate
>> to log in.
>>> Maybe you'll
>>> >>>>Â Â Â use scp
>>> >>>>>    to transfer data between your cluster
>> account and the
>>> loris
>>> >>>>Â Â Â server?
>>> >>>>>    Please put the data in /data/loris, so I
>> can make
>>> backups more
>>> >>>>Â Â Â easily.
>>> >>>>>
>>> >>>>>      secure shell:
>>> >>>>>      $ ssh loris
>>> >>>>>
>>> >>>>>      secure copy (change the names
>> in brackets). Let
>>> me know if
>>> >>>>Â Â Â I can
>>> >>>>>      help with syntax:
>>> >>>>>      $ scp -r <data>
>> loris:/data/loris/<newfolder>
>>> >>>>>
>>> >>>>>    2) front-end web interface. Open a
>> web browser in
>>> your remote
>>> >>>>Â Â Â desktop
>>> >>>>>    session and enter the hostname:
>>> >>>>>    [2][6][15][17]http://loris
>>> >>>>>    I created an admin user called
>> 'lorisweb'. I put the
>>> password
>>> >>>>Â Â Â in
>>> >>>>>    $HOME/newuser on the cluster. To see it,
>> open a
>>> terminal, and
>>> >>>>Â Â Â run:
>>> >>>>>
>>> >>>>>      $ cat $HOME/newuser
>>> >>>>>
>>> >>>>>    If other people need shell access to the
>> webserver,
>>> please let
>>> >>>>Â Â Â me know
>>> >>>>>    so I can create a home directory for
>> them.
>>> >>>>>
>>> >>>>>    We should eventually discuss backups.
>>> >>>>>
>>> >>>>>    best,
>>> >>>>>    Julie
>>> >>>>>
>>> >>>>> References
>>> >>>>>
>>> >>>>>   Visible links
>>> >>>>>   1.
>> mailto:[7][16][18]support-cirl at berkeley.edu
>>> >>>>>   2. [8][17][19]http://loris/
>>> >>>>Â Â Â ---end quoted text---
>>> >>>>
>>> >>>> References
>>> >>>>
>>> >>>>Â Visible links
>>> >>>>Â 1. [18][20]http://loris/
>>> >>>>Â 2.
>>>
>> [19][21]https://github.com/aces/Loris/wiki/Installing-Loris-in-Brief
>>> >>>>Â 3. mailto:[20][22]ioannis at berkeley.edu
>>> >>>>Â 4. mailto:[21][23]support-cirl at berkeley.edu
>>> >>>>Â 5. mailto:[22][24]support-cirl at berkeley.edu
>>> >>>>Â 6. [23][25]http://loris/
>>> >>>>Â 7. mailto:[24][26]support-cirl at berkeley.edu
>>> >>>>Â 8. [25][27]http://loris/
>>> >>> ---end quoted text---
>>> >>
>>> > ---end quoted text---
>>>
>>> --
>>> [26][28]christine.rogers at mcgill.ca
>>> McGill Centre for Integrative Neuroscience | MCIN.ca
>>> Montreal Neurological Institute
>>> McGill University | Montreal | Canada
>>>
>>> References
>>>
>>> Visible links
>>> 1.
>> [29]https://github.com/aces/Loris/wiki/Project-Customization#troubleshooting-configuration-settings
>>> 2. [30]https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>>> 3. mailto:[31]loris-dev at bic.mni.mcgill.ca
>>> 4. mailto:[32]ioannis at berkeley.edu
>>> 5. [33]http://loris/
>>> 6. mailto:[34]support-cirl at berkeley.edu
>>> 7. mailto:[35]ioannis at berkeley.edu
>>> 8. mailto:[36]support-cirl at berkeley.edu
>>> 9. mailto:[37]support-cirl at berkeley.edu
>>> 10. [38]http://xn--loris-7qa/
>>> 11. [39]https://github.com/aces/Loris/wiki/Installing-Loris-in-Brief
>>> 12. mailto:[40]ioannis at berkeley.edu
>>> 13. mailto:[41]support-cirl at berkeley.edu
>>> 14. mailto:[42]support-cirl at berkeley.edu
>>> 15. [43]http://loris/
>>> 16. mailto:[44]support-cirl at berkeley.edu
>>> 17. [45]http://loris/
>>> 18. [46]http://loris/
>>> 19. [47]https://github.com/aces/Loris/wiki/Installing-Loris-in-Brief
>>> 20. mailto:[48]ioannis at berkeley.edu
>>> 21. mailto:[49]support-cirl at berkeley.edu
>>> 22. mailto:[50]support-cirl at berkeley.edu
>>> 23. [51]http://loris/
>>> 24. mailto:[52]support-cirl at berkeley.edu
>>> 25. [53]http://loris/
>>> 26. mailto:[54]christine.rogers at mcgill.ca
>> ---end quoted text---
>>
>> --
>> [55]christine.rogers at mcgill.ca
>> McGill Centre for Integrative Neuroscience | MCIN.ca
>> Montreal Neurological Institute
>> McGill University | Montreal | Canada
>>
>> References
>>
>> Visible links
>> 1. mailto:loris-dev at bic.mni.mcgill.ca
>> 2. mailto:support-cirl at berkeley.edu
>> 3. http://loris.priv/
>> 4. https://github.com/aces/Loris/wiki/Project-Customization#troubleshooting-configuration-settings
>> 5. mailto:loris-dev at bic.mni.mcgill.ca
>> 6. mailto:ioannis at berkeley.edu
>> 7. http://loris/
>> 8. mailto:support-cirl at berkeley.edu
>> 9. mailto:ioannis at berkeley.edu
>> 10. mailto:support-cirl at berkeley.edu
>> 11. mailto:support-cirl at berkeley.edu
>> 12. http://xn--loris-era/
>> 13. https://github.com/aces/Loris/wiki/Installing-Loris-in-Brief
>> 14. mailto:ioannis at berkeley.edu
>> 15. mailto:support-cirl at berkeley.edu
>> 16. mailto:support-cirl at berkeley.edu
>> 17. http://loris/
>> 18. mailto:support-cirl at berkeley.edu
>> 19. http://loris/
>> 20. http://loris/
>> 21. https://github.com/aces/Loris/wiki/Installing-Loris-in-Brief
>> 22. mailto:ioannis at berkeley.edu
>> 23. mailto:support-cirl at berkeley.edu
>> 24. mailto:support-cirl at berkeley.edu
>> 25. http://loris/
>> 26. mailto:support-cirl at berkeley.edu
>> 27. http://loris/
>> 28. mailto:christine.rogers at mcgill.ca
>> 29. https://github.com/aces/Loris/wiki/Project-Customization#troubleshooting-configuration-settings
>> 30. https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>> 31. mailto:loris-dev at bic.mni.mcgill.ca
>> 32. mailto:ioannis at berkeley.edu
>> 33. http://loris/
>> 34. mailto:support-cirl at berkeley.edu
>> 35. mailto:ioannis at berkeley.edu
>> 36. mailto:support-cirl at berkeley.edu
>> 37. mailto:support-cirl at berkeley.edu
>> 38. http://xn--loris-7qa/
>> 39. https://github.com/aces/Loris/wiki/Installing-Loris-in-Brief
>> 40. mailto:ioannis at berkeley.edu
>> 41. mailto:support-cirl at berkeley.edu
>> 42. mailto:support-cirl at berkeley.edu
>> 43. http://loris/
>> 44. mailto:support-cirl at berkeley.edu
>> 45. http://loris/
>> 46. http://loris/
>> 47. https://github.com/aces/Loris/wiki/Installing-Loris-in-Brief
>> 48. mailto:ioannis at berkeley.edu
>> 49. mailto:support-cirl at berkeley.edu
>> 50. mailto:support-cirl at berkeley.edu
>> 51. http://loris/
>> 52. mailto:support-cirl at berkeley.edu
>> 53. http://loris/
>> 54. mailto:christine.rogers at mcgill.ca
>> 55. mailto:christine.rogers at mcgill.ca
> ---end quoted text---
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