[Loris-dev] [IPMSA] Upload NIFTI or MINC - No DICOMS available

[Cecile Madjar]

Dear Alfredo,

We actually added those 2 functionalities in release 20.2 that is supposed
to get out this week. Here is how you will be able to do that once you
upgrade to 20.2.

   - If you have a MINC file but no DICOM files, you can directly insert
   the MINC file using `minc_insertion.pl` with the `-force` option instead
   of the usual `-tarchivePath` option. So call you script as follow: `
   minc_insertion.pl -profile <prod or name of you profile file> -mincPath
   <path to the MINC file> -force`
   - If you have only NIfTI files, then you can insert them using a new
   script that was created for release 20.2 called `
   imaging_non_minc_insertion.pl` in the `uploadNeuroDB` folder. Look at
   the documentation of this PR (#271
   <https://github.com/aces/Loris-MRI/pull/271>) to see how to call this
   script (or also the perldoc of the script using `perldoc <script_name.pl
   >`; note that this is available for all our scripts in LORIS-MRI now
   since release 19.1.

Hope this helps. Let me know if anything is unclear. If it is not, it means
the documentation is not clear enough and we need to improve it. We don't
want that :).

Best wishes,

Cécile

On Tue, Jan 29, 2019 at 7:14 PM Morales Pinzon, Alfredo <
AMORALESPINZON at bwh.harvard.edu> wrote:

> Dear LORIS-dev team,
>
>
> In the IPMSA project we have some trials without DICOM images, instead
> their images come in NIFTI format. Do you have a procedure for the
> uploading of NIFTI images? We can also convert the images from NIFTI to
> MINC if this helps.
>
>
> Best regards,
>
> Alfredo.
>
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