[Loris-dev] [IPMSA] Error: The target directory does not contain a single DICOM file.

[Cecile Madjar]

Oups, sorry, I did not realize. How about a call with Zoom on Monday then?
This way we'll be able to share screens.

Let me know what time works for you.

On Fri, Apr 12, 2019 at 3:30 PM Morales Pinzon, Alfredo <
AMORALESPINZON at bwh.harvard.edu> wrote:

> Hi Cécile,
>
> It's great we can look into this together but, as I am based in Boston, we
> would need to do it by video call. I don't remember exactly the time for
> LORIS meeting, but I can make myself available anytime. Just let me know
> what works the best for you.
>
> Thank you for quick reply and help.
>
> Regards,
> Alfredo.
> ------------------------------
> *From:* Cecile Madjar <cecile.madjar at mcin.ca>
> *Sent:* Friday, April 12, 2019 2:19 PM
> *To:* Morales Pinzon, Alfredo
> *Cc:* loris-dev at bic.mni.mcgill.ca; Sridar Narayanan, Dr.; Rozie
> Arnaoutelis; Zografos Caramanos, Mr; Douglas Arnold, Dr.; Guttmann,
> Charles,M.D.
> *Subject:* Re: [Loris-dev] [IPMSA] Error: The target directory does not
> contain a single DICOM file.
>
>
>         External Email - Use Caution
>
> Hi again,
>
> Could we look into this issue together on Tuesday too? Not entirely sure
> why you get this error but we'll find out!!
>
> Thanks!
>
> Cécile
>
> On Fri, Apr 12, 2019 at 11:55 AM Morales Pinzon, Alfredo <
> AMORALESPINZON at bwh.harvard.edu> wrote:
>
> Dear Cécile,
>
> I checked a couple of cases having this issue and they have the dicom
> field 0020,0032. Here is an example using dcmdump:
>
> (0020,0032) DS [-128.95269713082\-161.29539118652\87.7198252597444] #  50,
> 3 ImagePositionPatient
>
> Does this look good? Are there other field that I should check?
>
> Regards,
> Alfredo.
>
> ------------------------------
> *From:* Cecile Madjar <cecile.madjar at mcin.ca>
> *Sent:* Tuesday, April 9, 2019 10:05 AM
> *To:* Morales Pinzon, Alfredo
> *Cc:* loris-dev at bic.mni.mcgill.ca; Sridar Narayanan, Dr.; Rozie
> Arnaoutelis; Zografos Caramanos, Mr; Douglas Arnold, Dr.; Guttmann,
> Charles,M.D.
> *Subject:* Re: [Loris-dev] [IPMSA] Error: The target directory does not
> contain a single DICOM file.
>
>
>         External Email - Use Caution
>
> Hi Alfredo,
>
> I have a feeling you are encountering an issue that was fixed in release
> 20.2 of LORIS-MRI where DICOM files without the header (0020,0032) were
> automatically rejected by the script get_dicom_info.pl with the error
> message saying that the file is not a DICOM, while it is actually a DICOM...
>
> If you don't wish to upgrade your LORIS instance to 20.2 right away, you
> can take a look at the following PR that solved the issue:
> https://github.com/aces/Loris-MRI/pull/365 to implement the fix.
>
> Hope this helps! Let me know how it goes,
>
> Cécile
>
>
>
> On Mon, Apr 8, 2019 at 6:02 PM Morales Pinzon, Alfredo <
> AMORALESPINZON at bwh.harvard.edu> wrote:
>
> Dear LoriDev team,
>
> Out of 82 MRI sessions that I was uploading into LORIS, 15 could not be
> uploaded due to the following error:
>
> ---------------------------------------
> Running now the following command:
> /AAA/loris_data/BBB/bin/mri/uploadNeuroDB/imaging_upload_file.pl -profile
> prod -upload_id 20844 /AAA/ANOM/STUDYNAME//AAA10026_343633_w024.tar.gz
> -verbose
>
> /AAA/loris_data/IPMSA/bin/mri/dicom-archive/dicomTar.pl
> /tmp/ImagingUpload-9-29-1gMub2 /AAA/loris_data/BBB/data/tarchive -clobber
> -database -profile prod -verbose
>  Source: /tmp/ImagingUpload-9-29-1gMub2
> Target: /AAA/loris_data/BBB/data/tarchive
>
> Testing for database connectivity.
> Database is available.
>
>          The target directory does not contain a single DICOM file.
>
> The dicomtar execution has failed
> ---------------------------------------
>
> I checked the file /AAA/ANOM/STUDYNAME//AAA10026_343633_w024.tar.gz and
> it has dicom files in it. Is there something a need to double check?
>
> Best regards,
> Alfredo.
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